DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and Grid1

DIOPT Version :10

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_077354.1 Gene:Grid1 / 79219 RGDID:68366 Length:1009 Species:Rattus norvegicus


Alignment Length:713 Identity:136/713 - (19%)
Similarity:231/713 - (32%) Gaps:201/713 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 FWNDKFEFQLLHKSDYISFVGINIK-----------------------SFDDNGGHYIIDTGLKK 68
            |.|:..|..|..|..:..||...|.                       |..||           :
  Rat   239 FINEAVETNLASKDSHWVFVNEEISDPEILDLVHSALGRMTVVRQIFPSAKDN-----------Q 292

  Fly    69 KELQNKHLFLDELVIKIIISIEVTHCETFVVFDKDIDRFVNAFNK----------ASVYSI---- 119
            |.::|.|.....|.......:::.......::| .:....|||::          ||:..|    
  Rat   293 KCMRNNHRISSLLCDPQEGYLQMLQISNLYLYD-SVLMLANAFHRKLEDRKWHSMASLNCIRKST 356

  Fly   120 --W---RSLHNKFVFAHIANESPESRNHFFED--QPNILFVVRDHSSASSFDIKTNKFVGRKAEN 177
              |   ||:.:.....||...:  ....|.||  .|.:.|.:...:.:.:|.....|.....:|.
  Rat   357 KPWNGGRSMLDTIKKGHITGLT--GVMEFREDSSNPYVQFEILGTTYSETFGKDMRKLATWDSEK 419

  Fly   178 PSQMILVDRYLASEQRFQFGKSLFADKLNNLQGREVIIAGFDYPPYTVIKHNMSTNAQDMGVSGE 242
            .....|.:|.:.|                .|||..:.:......|:.::..|:        :...
  Rat   420 GLNGSLQERPMGS----------------RLQGLTLKVVTVLEEPFVMVAENI--------LGQP 460

  Fly   243 SDFKNVYIDGTETRIVLN-FCEQFNCTIQIDSSAANDWGKVYPNMSGDGALGMLINRKADICIGA 306
            ..:|...||      ||: ..:......:|..:....:|....|.|.:|.:|.||:::||:.|.|
  Rat   461 KRYKGFSID------VLDALAKALGFKYEIYQAPDGRYGHQLHNTSWNGMIGELISKRADLAISA 519

  Fly   307 MYSWYEDYTYLDLSMYLVRSGITCLVPAPLRLTSWYLPLEPFKETLWAAILLCLCAEATGLVL-- 369
            :....|..:.:|.|...:...:..|:..|....|.:....||...:||.|...:  ...|:::  
  Rat   520 ITITPERESVVDFSKRYMDYSVGILIKKPEEKISIFSLFAPFDFAVWACIAAAI--PVVGVLIFV 582

  Fly   370 -----AYKSEQALYVLPGYREGWWTCTSFGVCTTFKLFISQSGNSKAYSLTVRVLLFACFLNDLI 429
                 |.:|:.|....|....   |..| .:...:..|:.|.|.|...|:.:|:::.:.:|..||
  Rat   583 LNRIQAVRSQSATQPRPSASA---TLHS-AIWIVYGAFVQQGGESSVNSVAMRIVMGSWWLFTLI 643

  Fly   430 ITSIYGGGLASILTIPSMDEAADTVTRL-----------------RFHRL-------QWAANSEA 470
            :.|.|...||:.||:..||....|...|                 .:.|.       |.:..:|.
  Rat   644 VCSSYTANLAAFLTVSRMDSPVRTFQDLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQDSTFAEL 708

  Fly   471 W--VSAIRASDEALVKDILYNFHIYSDDELLRLAQDQHMRIGFTVERLPFGHFAIGNYLGPQAID 533
            |  :|....:|..          :.:..|.:|.|:.              |::|   :|...|:.
  Rat   709 WRTISKNGGADNC----------VSNPSEGIRKAKK--------------GNYA---FLWDVAVV 746

  Fly   534 QLVIMKDD-----------------IYFQ----YTVAFVPRLWPLLD--KLNTLIYSW--HSSGF 573
            :...:.||                 |..|    |...|..|:..|.|  .|:.|...|  |:...
  Rat   747 EYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPHTGRC 811

  Fly   574 DKYWEYRVVADNLNLKIQQQVQETMTGTKDIGPVPLGMSNFAGFIIVWILGSAIATLTFLLEL 636
            |.........|..:||:.                     :|||...:..:|..:|.|...|||
  Rat   812 DLTSHSSAQTDGKSLKLH---------------------SFAGVFCILAIGLLLACLVAALEL 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
Grid1NP_077354.1 Interaction with CBLN1. /evidence=ECO:0000250|UniProtKB:Q61627 21..436 39/226 (17%)
PBP1_iGluR_delta_1 25..425 CDD:380615 35/199 (18%)
PBP2_iGluR_delta_1 436..806 CDD:270448 82/416 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.

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