DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and grin3ba

DIOPT Version :10

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:392 Identity:86/392 - (21%)
Similarity:145/392 - (36%) Gaps:100/392 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 GALGMLINRKADIC-----IGAMYSWYEDYT--YLDLSM-YLVRSGITCLVPAPLRLTSWYLPLE 346
            |.:|.|::..||:.     |.:..|...|:|  :...|: .||||..|.   ||:....|     
Zfish   559 GLVGDLLSGVADMAVTSFSINSARSRVIDFTSPFFSTSLGILVRSKDTA---APIGAFMW----- 615

  Fly   347 PFKETLWAAILLCLCAEATGLVLAYKSEQALYVLPGYREGWWTCTSFGVC----TTFKLFISQSG 407
            |...::|..|.:.|...|..:.| |:               |. :.||:.    ...::|...|.
Zfish   616 PLHWSMWVGIFVALHITALFITL-YE---------------WN-SPFGMTPHGRNRIRVFSYSSA 663

  Fly   408 NSKAYSL--------------TVRVL--LFACFLNDLIITSIYGGGLASILTIPSMDEAADTVTR 456
            .:..|::              |.|.|  |:|.|.  |::.|.|...||:::......|....:..
Zfish   664 LNLCYAILFGRTVASKTPKCWTGRFLMNLWAIFC--LLVLSSYTANLAAVMVGEKTFEEVSGIHD 726

  Fly   457 LRFHRLQWAANSEAWVSAIR-ASDEALVKDILYNFHIY--------SDDELLRLAQDQHMRIGFT 512
            ::.|.......    ...:| :|.|..||......|.|        :.|.:..|..|......|.
Zfish   727 VKLHHPSLGFR----FGTVRESSAEDYVKKSFPEMHEYMRRFNKPTTPDGVSTLKTDPPQLDAFI 787

  Fly   513 VERLPFGHFAIGNYLGPQAIDQ----LVIMKDDIYFQYTVAFVPRLWPLLDKLNTLIYSWHSSGF 573
            :::      |:.:|  ..:||.    |.:.|......|.:. :|:..||...::..:..:.|.|:
Zfish   788 MDK------ALLDY--EVSIDADCKLLTVGKPFAIEGYGIG-LPQNSPLTRNVSEYVSRYKSDGY 843

  Fly   574 -----DKYWEYRVVADNLNLKIQQQVQETMTGTKDIGPVPLGMSNFAGFIIVWILGSAIATLTFL 633
                 ||:  |:||...   |....|.||:         .:|:.:|:|..::..:|.|.|.||.|
Zfish   844 MDMLHDKW--YKVVPCG---KRVFAVTETL---------QMGIQHFSGLFVLLCVGVAGALLTLL 894

  Fly   634 LE 635
            .|
Zfish   895 GE 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
grin3baXP_021323058.1 Periplasmic_Binding_Protein_type1 36..427 CDD:471960
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 69/334 (21%)
Lig_chan 618..885 CDD:459656 60/312 (19%)
Blue background indicates that the domain is not in the aligned region.

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