DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and grin3a

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:766 Identity:152/766 - (19%)
Similarity:259/766 - (33%) Gaps:236/766 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 FQLLHKSDY--ISFV---GINIKSFD---DNGGHYIIDTGLK----KKELQNKHLFLDELVIKII 86
            |.||..:::  :|.|   .:||..|.   .|...:.:.|.||    .....:.|:||...:..|.
Zfish   259 FSLLSMNNWFDVSLVMCQQMNISDFVFLLHNNSKFHLGTVLKISTNSSSKNDFHIFLQAQLESIK 323

  Fly    87 ISIEVTHCETFVVFDKDIDRFVNAFNKASVYSI------W--------RSLHNK----FVFAHIA 133
            .|     ..|.|.|..||......|...:.:.:      |        ..|..:    .:.||..
Zfish   324 DS-----TSTLVTFGCDIRDIRRIFTTIAKFGLILPDYHWIIGDSQNVEELRTEGLPMGLLAHGR 383

  Fly   134 NESPESRNHFFEDQPNILFVVRDHSSASSFDIK-------TNKFVGRKAENPSQMILVDRYLASE 191
            ...| |.:|:.:|.  :..|.|...||::...:       ||.....:|:|.:....:.||:||.
Zfish   384 MGEP-SLDHYVQDA--LELVARAVGSAATVSPQLALIPGTTNCLARLEAKNLTSGTFLSRYMAST 445

  Fly   192 ----------------------------QRFQFGKSLFADKLNNLQGREVIIAGFDYPPY----- 223
                                        |....||.::. :|.:.:..:|::   ||..:     
Zfish   446 SFDGLSGCISVQEESTIISESHHFIWNLQHDPIGKPMWT-RLGSWKHGKVVM---DYGVWPNKRR 506

  Fly   224 ------------------TVIKHN--MSTNAQDMGV--SG--------------ESDFKNVYIDG 252
                              |:::|.  .:.:..|.|:  :|              ||.|:.  :.|
Zfish   507 SQPGADWRHSSRLHLRVVTLVEHPFVFTRDVDDEGLCPAGQLCLDPLTNDTALLESLFQG--LQG 569

  Fly   253 TETRIVLNF---CEQFNCTIQIDSSAANDWG---KVYPNMSGDGALGMLINRK-----ADICIGA 306
            ....:.|.|   |  :...|.:....|.|.|   .:|  :.|||..|...|.:     .|:..||
Zfish   570 ANDTVPLEFKKCC--YGYCIDLLEKLAEDMGFDFDLY--IVGDGKYGAYKNGRWTGLVGDLMSGA 630

  Fly   307 MY------------SWYEDYT--YLDLSM-YLVRSGITCLVPAPLRLTSWYLPLEPFKETLWAAI 356
            .:            |...|:|  :...|: .|||:..|.   ||:....|     |...::|..|
Zfish   631 AHLAVTSFSINSARSQVIDFTSPFFSTSLGILVRTRDTA---APIGAFMW-----PLHWSMWLGI 687

  Fly   357 LLCLCAEATGLVLAYKSEQALYVLPGYREG---WWTCTSFGVCTTFKLFISQSGNSKAYSLTVRV 418
            .:.|...|..|.| |:.:....:.|..|..   :...::..||... ||...:........|.|.
Zfish   688 FVSLHVTAVFLTL-YEWKSPFGMTPRGRNRDRVFSFSSALNVCYAI-LFGRTAAIKPPKCWTGRF 750

  Fly   419 L--LFACFLNDLIITSIYGGGLASILTIPSMDEAADTVTRLRFHRLQWAANSEAWVSAIRASDEA 481
            |  |:|.|.  |...|.|...||:::.   .::..:.::.:...:|...:....:.:...:|.|.
Zfish   751 LMNLWAIFC--LFCLSTYTANLAAVMV---GEKTYEQLSGIHDPKLHHPSQGFRFGTVRESSAED 810

  Fly   482 LVKDILYNFHIY--------SDDELLRLAQDQHMRIGFTVERLPFGHFAIGNYLGPQAIDQLVIM 538
            .||......|.|        :.|.:..|..|                        ||.:|..::.
Zfish   811 YVKKSFPEMHEYMRRYNAPTTPDGIDHLKDD------------------------PQKLDAFIMD 851

  Fly   539 K---------DDIYFQ-----YTVAFVPRLWPLLDKLNTLIYSWHSSGF-----DKYWEYRVVAD 584
            |         |. |..     |.:. :.:..||...::.|:..:.|.||     ||:  |:||..
Zfish   852 KALLDYWAHADKXYISLLLTGYGIG-LKQNSPLTSNISELVSQYKSDGFMDMLHDKW--YKVVPC 913

  Fly   585 NLNLKIQQQVQETMTGTKDIGPVPLGMSNFAGFIIVWILGSAIATLTFLLE 635
            .   |....|.||:         .:|:.:|:|..::..:|.|::.||.|.|
Zfish   914 G---KRSFAVTETL---------QMGIKHFSGLFVMLCVGVALSLLTTLGE 952

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141 50/254 (20%)
ANF_receptor 132..452 CDD:279440 43/200 (22%)
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 86/437 (20%)
Lig_chan 682..941 CDD:278489 59/304 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591695
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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