DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and grik1b

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:XP_690040.5 Gene:grik1b / 561540 ZFINID:ZDB-GENE-070821-1 Length:906 Species:Danio rerio


Alignment Length:601 Identity:109/601 - (18%)
Similarity:197/601 - (32%) Gaps:155/601 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 RFVNAFNKASVYSIWRSLHNKFVFAHIANESPESRNHFFEDQPNILFVVRDHSSASSFDIKTNKF 170
            ||::.|.:|.    |..|..:.    |.|::...|..|..|   |:.:..|.........:.|| 
Zfish   386 RFISMFKEAQ----WNGLTGQI----IINKTDGLRKDFDLD---IISLKEDGLEKPLESGRFNK- 438

  Fly   171 VGRKA---ENPSQMILVDRYLASEQRFQFGKSLFADKLNNLQGREVIIAGFDYPPYTVIKHNMST 232
            |.:|.   .:.:.:.|.|.          .|....:..:::..|.:|:......||.:.|.:   
Zfish   439 VWKKIGVWNSNTGLNLTDS----------NKDKNTNVTDSMANRTLIVTTILENPYVMYKKS--- 490

  Fly   233 NAQDMGVSGESDFKNVYID-GTETRIVLNFCEQFNCTIQIDSSAANDWGKVYPNMSGDGALGMLI 296
               |..:.|...|:...:| ..|...:|.|..:..........|.||.|:      .:|.:..||
Zfish   491 ---DKPLYGNDRFEGYCLDLLKELSNILGFSYEVKLVTDGKYGAQNDKGE------WNGMVRELI 546

  Fly   297 NRKADICIGAMYSWYEDYTYLDLSMYLVRSGITCLVPAP----LRLTSWYLPLEPFKETLWAAIL 357
            :..||:.:..:...|.....:|.|...:..||:.|...|    ..:.|:..||.|   .:|..:|
Zfish   547 DHVADLAVAPLTITYVREKVIDFSKPFMTLGISILYHKPNGTNPGVFSFLNPLSP---DIWMYVL 608

  Fly   358 L-CLCAEATGLVLAYKSEQALYVLPGYREGWW----TCTS----------------FGVCTTFKL 401
            | ||....           .|:|:..:....|    .|..                |||    ..
Zfish   609 LACLGVSC-----------VLFVIARFTPYEWYNPHPCNPDSDVVENNFTLINSVWFGV----GA 658

  Fly   402 FISQSGNSKAYSLTVRVLLFACFLNDLIITSIYGGGLASILTIPSMDEAADTV------------ 454
            .:.|.......:|:.|::....:...|||.|.|...||:.||:..||...|:.            
Zfish   659 LMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMDSPIDSADDLAKQTKIEYG 723

  Fly   455 ------TRLRFHRLQWAANSEAWVSAIRASDEALVKD--------ILYNFHIYSDDELLRLAQDQ 505
                  |...|.:.:.:...:.|.......:.||||:        :..::.:..:...:.....:
Zfish   724 AVRDGSTMTFFKKSKISTYEKMWAFMSSRKNTALVKNNREGIQRVLTTDYALLMESTSIEYISQR 788

  Fly   506 H---MRIGFTVERLPFGHFAIGNYLGPQAIDQLVIMKDDIYFQYTVAFVPRLWPLLDKLNTLIYS 567
            :   .:||..::...:|   :|..:|....|::.|....:..:..:..:...|            
Zfish   789 NCNLTQIGGLIDSKGYG---VGTPIGSPYRDKVTIAILQLQEEGKLHMMKEKW------------ 838

  Fly   568 WHSSGFDKYWEYRVVADNLNLKIQQQVQETMTGTKDIGPVPLGMSNFAGFIIVWILGSAIATLTF 632
            |..:|..                ::..:|...         ||:.|..|..||...|..::....
Zfish   839 WRGNGCP----------------EEDSKEASA---------LGVENIGGIFIVLAAGLVLSVFVA 878

  Fly   633 LLELSLTYILK-QSNL 647
            :.|    :|.| :.||
Zfish   879 IGE----FIYKSRKNL 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
grik1bXP_690040.5 Periplasmic_Binding_Protein_Type_1 62..455 CDD:299141 17/80 (21%)
ANF_receptor 80..423 CDD:279440 12/47 (26%)
Periplasmic_Binding_Protein_Type_2 471..840 CDD:304360 74/413 (18%)
Lig_chan 602..871 CDD:278489 51/323 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591591
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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