DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and grik2

DIOPT Version :10

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_001410875.1 Gene:grik2 / 556013 ZFINID:ZDB-GENE-080414-1 Length:908 Species:Danio rerio


Alignment Length:517 Identity:99/517 - (19%)
Similarity:168/517 - (32%) Gaps:150/517 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 QFGKSLFADKLNNLQGREVIIAGFDYPPYTVIKHNMSTNAQDMGVSGESDFKNVYID-------- 251
            |.||:  |:..::|..|.::::.....||.:.|.:      |..:.|...|:...:|        
Zfish   417 QKGKT--ANVTDSLSNRSLVVSTILEEPYVMFKKS------DKPLYGNDRFEGYCVDLLRELAAI 473

  Fly   252 ---GTETRIVLNFCEQFNCTIQIDSSAANDWGKVYPNMSGDGALGMLINRKADICIGAMYSWYED 313
               |.|.|:|    |......|.:||  ..|         :|.:..|::.|||:.:..:...|..
Zfish   474 LGFGYELRLV----EDGRYGAQDESS--GQW---------NGMVRELMDHKADLAVAPLAITYVR 523

  Fly   314 YTYLDLSMYLVRSGITCLVPAP----LRLTSWYLPLEPFKETLWAAILLCLCAEATGLVLAYKSE 374
            ...:|.|...:..||:.|...|    ..:.|:..||.|   .:|..||           |||...
Zfish   524 EKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSP---DIWMYIL-----------LAYLGV 574

  Fly   375 Q-ALYVLPGYREGWW----TC--------TSFGVCTTF----KLFISQSGNSKAYSLTVRVLLFA 422
            . .|:|:..:....|    .|        .:|.:..:|    ...:.|.......:|:.|::...
Zfish   575 SCVLFVIARFSPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGI 639

  Fly   423 CFLNDLIITSIYGGGLASILTIPSMDEAADTV-------------------------TRLRFHRL 462
            .:...|||.|.|...||:.||:..|:...|:.                         |::..:..
Zfish   640 WWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGVVEDGSTMTFFKKTKISTYDK 704

  Fly   463 QWAANSEAWVSAIRASDEALVKDIL---YNFHIYSDD-ELLRLAQDQHMRIGFTVERLPFGHFAI 523
            .|...|....|.:..|.|..::.:|   |.|.:.|.. |.:........:||..::...:|   :
Zfish   705 MWEFMSSRRHSVMVKSIEEGIERVLTSDYAFLMESTTIEFVTQRNCNLTQIGGLIDSKAYG---V 766

  Fly   524 GNYLGPQAIDQLVIMKDDIYFQYTVAFVPRLWPLLDKLNTLIYSWHSSG-----FDKYWEYRVVA 583
            |..:|.                          |..||:...|......|     .:|:|......
Zfish   767 GTPMGS--------------------------PYRDKITIAILQLQEEGKLHMMKEKWWRGNGCP 805

  Fly   584 DNLNLKIQQQVQETMTGTKDIGPVPLGMSNFAGFIIVWILGSAIATLTFLLELSLTYILKQS 645
            :..|.:..                .||:.|..|..||  |.:.:....|:......|..||:
Zfish   806 EEENKEAS----------------ALGVQNIGGIFIV--LAAGLVLSVFVAVGEFLYKSKQN 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
grik2NP_001410875.1 PBP1_iGluR_Kainate 37..414 CDD:380605
Periplasmic_Binding_Protein_Type_2 430..800 CDD:473866 81/433 (19%)
Blue background indicates that the domain is not in the aligned region.

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