DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and GluRIID

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_651982.1 Gene:GluRIID / 44483 FlyBaseID:FBgn0028422 Length:902 Species:Drosophila melanogaster


Alignment Length:677 Identity:135/677 - (19%)
Similarity:238/677 - (35%) Gaps:165/677 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 DYISFVG-INIKSFDDNGGHY--IIDTGLKK--------KELQNK-HLFLDELVIKIIISIEVTH 93
            ||...:| :|:.:||.....|  ...||::.        ::|..| |..|.|       |..|..
  Fly   238 DYTYIIGNLNLHTFDLEEYKYSEANITGIRMFSPDQEEVRDLMEKLHQELGE-------SEPVNS 295

  Fly    94 CETFVVFDKDIDRFVNAFNKASVYSIWRSLHNKFVFAHIANESPESRNHFFEDQPNILFVVRDHS 158
            ..||:..:           .|..|...|      |.|......|.        ||.:|.....|.
  Fly   296 GSTFITME-----------MALTYDAVR------VIAETTKHLPY--------QPQMLNCSERHD 335

  Fly   159 SAS-----------SFDIKTNKFVGR---------------KAENPSQMILVDRYLASEQRFQFG 197
            :..           |.:||.....||               .....|.::.|..:...:. |:|.
  Fly   336 NVQPDGSTFRNYMRSLEIKEKTITGRIYFEGNVRKGFTFDVIELQTSGLVKVGTWEEGKD-FEFQ 399

  Fly   198 KSLFADKLNNLQGRE------VIIAGFDYPPYTVIKHNMSTNAQDMGVSGESDFKNVYIDGTETR 256
            :...|...|::....      :::......||..:..::.|      :.|.:.|:...:|     
  Fly   400 RPPQAVNFNDIDDGSLVNKTFIVLISVATKPYASLVESIDT------LIGNNQFQGYGVD----- 453

  Fly   257 IVLNFCEQ--FNCTIQIDSSAANDWGKVYPNMSGDGALGML---INRKADICIGAMYSWYEDYTY 316
            ::....::  ||.|.:   ...||:|..  |.:.:...|||   :..:||:.|..:....|....
  Fly   454 LIKELADKLGFNFTFR---DGGNDYGSF--NKTTNSTSGMLKEIVEGRADLAITDLTITSEREEV 513

  Fly   317 LDLSMYLVRSGITCLV----PAPLRLTSWYLPLEPFKETLW-----AAILLCLCAEATGLV--LA 370
            :|.|:..:..||..|.    .||..|.|:   ::||...:|     |.:.:.||....|.:  :.
  Fly   514 IDFSIPFMNLGIAILYVKPQKAPPALFSF---MDPFSSEVWLYLGIAYLGVSLCFFIIGRLSPIE 575

  Fly   371 YKSEQALYVLPGYREGWWTCTSFGVCTTFKLFISQSGNSKAYSLTVRVLLFACFLNDLIITSIYG 435
            :.:.......|...|..:|..:....||..| :.|.......:|:.|.:....:...||:.|.|.
  Fly   576 WDNPYPCIEEPEELENQFTINNSLWFTTGAL-LQQGSEIAPKALSTRTISAIWWFFTLIMVSSYT 639

  Fly   436 GGLASILTIPSMDEAADTVTRLRFHR--LQWAA-NSEAWVSAIRASDEALVKDILYNFHIYSDDE 497
            ..||:.|||.:.....::|..|..::  :|:.| .:.:..:....|:|.:.  |..|.::.:..|
  Fly   640 ANLAAFLTIENPTSPINSVKDLADNKDDVQYGAKRTGSTRNFFSTSEEPIY--IKMNEYLNAHPE 702

  Fly   498 LLRLAQDQHM-------RIGFTVE--RLPFGHF------AIGNYLGPQAIDQLVIMKDDIYFQYT 547
            :|.....|.:       :..|.:|  .:.|...      .:|:.|..:.              |.
  Fly   703 MLMENNQQGVDKVKSGTKYAFLMESTSIEFNTVRECNLTKVGDPLDEKG--------------YG 753

  Fly   548 VAFVPRLWPLLDKLNTLIYSWHSSGF-----DKYWEYRVVADNLNLKIQQQVQETMTGTKDIGPV 607
            :|.| :.||..||.|..:......|.     :|:|. .|.|...:.|           :.|.||.
  Fly   754 IAMV-KNWPYRDKFNKALLELQEQGVLARLKNKWWN-EVGAGVCSAK-----------SDDDGPS 805

  Fly   608 PLGMSNFAGFIIVWILGSAIATLTFLL 634
            .||:.|.:|..:|.::||.|:.:..:|
  Fly   806 ELGVDNLSGIYVVLVIGSIISIIISIL 832

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
GluRIIDNP_651982.1 PBP1_iGluR_Kainate 35..397 CDD:107377 35/191 (18%)
ANF_receptor 46..380 CDD:279440 33/173 (19%)
PBP2_iGluR_Kainate 417..788 CDD:270432 80/407 (20%)
Lig_chan 549..819 CDD:278489 60/299 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462843
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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