DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and Ekar

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster


Alignment Length:725 Identity:147/725 - (20%)
Similarity:245/725 - (33%) Gaps:212/725 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SLVLSAIVGKYLNESTICIFWNDKFEFQLLHKSDYISFVGINIKSFDDNGGHYIIDTG------- 65
            |::|..|:.:.:||......:. .|:.:.....|: .:..:||.||      .::||.       
  Fly   208 SILLKNILQQQMNEYKYHYLFT-SFDLETYDLEDF-KYNFVNITSF------RLVDTADVGVKQI 264

  Fly    66 LKKKELQNKHLFLDELVIKIIISIEVTHCETFVVFDKDIDRFVNAFNKASVYSIWRSLHNKFVFA 130
            ||...|.:.|:|....:...|....:...|..::||             |||          |||
  Fly   265 LKDIGLYSHHIFKKPYLNLHIKKSTILESEPALMFD-------------SVY----------VFA 306

  Fly   131 ---------H---IANESPESRNHFFEDQPNILFVVRDHSSASSFDIKTNKFVGRKAENPSQMIL 183
                     |   :.|.|.|..|.:              ....|.....|....:....|.|   
  Fly   307 IGLQTLEQSHSLTLLNISCEEENSW--------------DGGLSLINYLNAVEWKGLTGPIQ--- 354

  Fly   184 VDRYLASEQRFQFGKSLFADKLNNLQGREVIIAGFDYPPY---TVIKHNMSTNAQDMGVSGESDF 245
                ....||.||...|.     .|:...::..| ::.|:   .:.:.:|..:|..|.|:     
  Fly   355 ----FKDGQRVQFKLDLI-----KLKQHSIVKVG-EWTPHGHLNITEPSMFFDAGSMNVT----- 404

  Fly   246 KNVYIDGTETRIVL--------------NFCEQFNCTIQ--------IDSSAANDWGKVYPNMSG 288
             .|.|...||..|:              .||.....||.        :|......:|...|. :|
  Fly   405 -LVVITILETPYVMMHYGKNFTGNERFYGFCVDILETISREVGFDYILDLVPDRKYGAKDPE-TG 467

  Fly   289 D--GALGMLINRKADICIGAMYSWYEDYTYLDLSMYLVRSGITCL--VPA--PLRLTSWYLPL-- 345
            :  |.:..|:..|||:.:|:|...|...:.:|.:...:..||:.|  ||.  |.||.|:..||  
  Fly   468 EWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSEPTRLFSFMNPLAI 532

  Fly   346 EPFKETLWAAILLCLCAEATGLVLAYKSEQALYVLPGYREGWWTC------------TSFGVCTT 398
            |.:...|.|..|:.||               :|::.......|.|            ..|.:..:
  Fly   533 EIWIYVLIAYFLVSLC---------------IYIVGKLSPIEWKCINACDLENISIGNQFSLTDS 582

  Fly   399 F----KLFISQSGNSKAYSLTVRVLLFACFLNDLIITSIYGGGLASILT----IPSMDEAAD--T 453
            |    ..|:.||.:....:::.|::........|||.:.|...||:.||    |..::.|.|  :
  Fly   583 FWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLAS 647

  Fly   454 VTRLRFHRLQWAANSEAWVSAIRASDEALVKDILYNFHIYSDDELLRLAQDQHMRIGFT------ 512
            .|.:.:..|    :|.:.::..|.|.....|.|.             .:.|......||      
  Fly   648 QTEISYGTL----DSGSTMTFFRDSVIETYKKIW-------------RSMDNKKPSAFTTTYEDG 695

  Fly   513 VERLPFGHFAIGNYLGPQAIDQLVIMKDDIYFQ---------YTVAFVPRLWPLLDKLNTLIYSW 568
            ::|:..|::|   :|....:...::.:|....|         |.:| .|:..|..||::..|...
  Fly   696 IKRVNQGNYA---FLMESTMLDYIVQRDCNLTQIGGLLDTKGYGIA-TPKGSPWRDKISLAILEL 756

  Fly   569 HSSG-----FDKYWEYRVVADNLNLKIQQQVQETMT---GTKDIGPVPLGMSNFAGFIIVWILGS 625
            ...|     :||:|              :...||.|   .:|......||:.:..|..:|.|.|.
  Fly   757 QERGDIQMLYDKWW--------------KNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGI 807

  Fly   626 AIATLTFLLE 635
            .:|.:....|
  Fly   808 IVAAVVAFFE 817

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..388 CDD:107377 45/237 (19%)
ANF_receptor 39..371 CDD:279440 42/219 (19%)
PBP2_iGluR_Kainate 402..771 CDD:270432 87/425 (20%)
Lig_chan 533..807 CDD:278489 62/323 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463067
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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