DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir41a and clumsy

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster


Alignment Length:570 Identity:109/570 - (19%)
Similarity:178/570 - (31%) Gaps:175/570 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 DQPNILFVVRDHSSASSFDIKTNKFVGRKAENPSQMILVDRYLASEQRFQFGKSLFADKLNNLQG 210
            |..|.|.|:.|       |.::.|.||:|..|.:       ::.|.   :.|.....  |...|.
  Fly   390 DPVNGLDVLND-------DEESEKRVGQKLSNKT-------FIVSS---RLGAPFLT--LREPQE 435

  Fly   211 REVIIAGFDYPPYTVIKHNMSTNAQDMGVSGESDFKNVYIDGTETRIVLNFCEQFNCTIQIDSSA 275
            .|::.....|..|::                  |..|      |...:|||..:|..:......|
  Fly   436 GEILTGNSRYEGYSI------------------DLIN------EIAKMLNFKFEFRMSPDGKYGA 476

  Fly   276 ANDWGKVYPNMSGDGALGMLINRKADICIGAMYSWYEDYTYLDLSMYLVRSGITCLV---PAPLR 337
            .|   ||  ..:.||.:..||:..||:.|..:.........:|.:...:..||:.|.   |.|  
  Fly   477 LN---KV--TQTWDGIVRQLIDGNADLGICDLTMTSSRRQAVDFTPPFMTLGISILFSKPPTP-- 534

  Fly   338 LTSWYLPLEPFKETLW----------AAILLCL-------------CAEATGLVLAYKSEQALYV 379
            .|..:..|.||...:|          :.:|..|             |.|                
  Fly   535 PTDLFSFLSPFSLDVWIYMGSAYLFISLLLFALARMAPDDWENPHPCKE---------------- 583

  Fly   380 LPGYREGWWTCTSFGVCTTFKLFISQSGNS-----KAYSLTVRVLLFACFLNDLIITSIYGGGLA 439
             |...|..|:..:    ||:....|..|..     ||.|  .|::....:...|::.:.|...||
  Fly   584 -PEEVENIWSIMN----TTWLSIGSLMGQGCDILPKAAS--TRLVTGMWWFFALMMLNSYTANLA 641

  Fly   440 SILT----IPSMDEAADTVTRLR--------------FHRLQWAANSEAWVSAIRASDEALVKDI 486
            :.||    ..|::.|.|...:.:              |....::...:.|.:...||.....|  
  Fly   642 AFLTNSRQANSINSAEDLAAQSKIKYGAMAGGSTMGFFRDSNFSTYQKMWTAMESASPSVFTK-- 704

  Fly   487 LYNFHIYSDDELLRLAQDQHMRIGFTVERLPFGHFAIGNYLGPQAIDQLVIMKDDI--------Y 543
                   ::||              .|||:..|.......:....::..|..|.|:        |
  Fly   705 -------TNDE--------------GVERVQKGKNLYAFLMESTTLEYNVERKCDLVQIGGWLDY 748

  Fly   544 FQYTVAFVPRLWPLLDKLNTLIYSWHSSG-----FDKYWEYRVVADNLNLKIQQQVQETMTGTKD 603
            ..|.:| :|...|...:::..:......|     ..|:|:......|..           ...:|
  Fly   749 KSYGIA-MPFNSPYRKQISAAVLKLGELGQLAELKRKWWKEMHGGGNCE-----------KSDED 801

  Fly   604 IGPVP-LGMSNFAGFIIVWILG----SAIATLTFLLELSLTYILKQSNLK 648
            .|..| ||:.|..|..:|..||    ..:....||..:....|.::.:||
  Fly   802 GGDTPELGLENVGGVFLVLGLGLLSAMVLGCTEFLWNVKSVAIEEKISLK 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 2/5 (40%)
ANF_receptor 39..379 CDD:279440
PBP2_iGluR_Kainate 414..787 CDD:270432 82/462 (18%)
Lig_chan 548..812 CDD:278489 53/321 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462650
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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