DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and Gria2

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_001077280.1 Gene:Gria2 / 29627 RGDID:61862 Length:883 Species:Rattus norvegicus


Alignment Length:707 Identity:138/707 - (19%)
Similarity:237/707 - (33%) Gaps:205/707 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 DYISFVGINIKSFDDNGGHYII-DTGLKKKELQNKHLFLDELVIKIIISIEVTHCETFVVFDKDI 104
            |.:..:|.::|     |.|||| :.|           |.|..::|  |.....:...|.:.|.| 
  Rat   221 DQVITIGKHVK-----GYHYIIANLG-----------FTDGDLLK--IQFGGANVSGFQIVDYD- 266

  Fly   105 DRFVNAFNKASVYSIWRSLHNK-FVFAHIANESPESRNHFFEDQPNILFVVRDHSSASSFD---I 165
            |..|:.|.:.     |.:|..| :..||.|...                    ::||.::|   :
  Rat   267 DSLVSKFIER-----WSTLEEKEYPGAHTATIK--------------------YTSALTYDAVQV 306

  Fly   166 KTNKF---------VGRKAE------NPS----QMILVDRYLASEQ--------RF-QFGKSL-- 200
            .|..|         :.|:..      ||:    |.:.::|.|...|        :| |.||.:  
  Rat   307 MTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINY 371

  Fly   201 -------------------FADKL-------------NNLQGREVIIAGFDYPPYTVIKHNMSTN 233
                               ..||:             :.|:.:.|::......||.::|.|    
  Rat   372 TINIMELKTNGPRKIGYWSEVDKMVVTLTELPSGNDTSGLENKTVVVTTILESPYVMMKKN---- 432

  Fly   234 AQDMGVSGESDFKNVYIDGTETRIVLNFCEQFNCTIQIDSS-AAND-----WGKVYPNMSGDGAL 292
             .:| :.|...::...:| ....|..:...::..||..|.. .|.|     |         :|.:
  Rat   433 -HEM-LEGNERYEGYCVD-LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIW---------NGMV 485

  Fly   293 GMLINRKADICIGAMYSWYEDYTYLDLSMYLVRSGITCLVPAPLRLTSWYLP-LEPFKETLWAAI 356
            |.|:..||||.|..:.........:|.|...:..||:.::..|.:....... |:|....:|..|
  Rat   486 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCI 550

  Fly   357 LLCLCAEATGLVLAYKSEQALYVLPGYREGWWTCTS-----FGVCTT--FKL--FISQSGNSKAY 412
            :......:..|.|..:.....:....:.:|..|.:|     ||:..:  |.|  |:.|..:....
  Rat   551 VFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMRQGCDISPR 615

  Fly   413 SLTVRVLLFACFLNDLIITSIYGGGLASILTIPSM---DEAADTV---------------TRLRF 459
            ||:.|::....:...|||.|.|...||:.||:..|   .|:|:.:               |:..|
  Rat   616 SLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFF 680

  Fly   460 HRLQWAANSEAWVSAIRASDEALVKDILYNF---------HIYSDDELLRLAQDQHMRIGFTVER 515
            .|.:.|...:.|.....|.....|:......         :.|    ||....::::.     :|
  Rat   681 RRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAY----LLESTMNEYIE-----QR 736

  Fly   516 LPFGHFAIGNYLGPQAIDQLVIMKDDIYFQYTVAFVPRLWPLLDKLNTLIYSWHSSGFDKYWEYR 580
            .|.....:|..|..:.              |.:| .|:...|.:.:|..:...:..|        
  Rat   737 KPCDTMKVGGNLDSKG--------------YGIA-TPKGSSLGNAVNLAVLKLNEQG-------- 778

  Fly   581 VVADNLNLKIQQQVQETMTGTKDI--GPVPLGMSNFAGFIIVWILGSAIATLTFLLE 635
             :.|.|..|......|..:|..|.  ....|.:||.||...:.:.|..:|.|..|:|
  Rat   779 -LLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
Gria2NP_001077280.1 PBP1_iGluR_AMPA_GluR2 28..397 CDD:107384 43/219 (20%)
ANF_receptor 56..379 CDD:279440 41/201 (20%)
PBP2_iGluR_AMPA 413..794 CDD:270433 81/429 (19%)
Glutamate binding 499..501 0/1 (0%)
Lig_chan 545..824 CDD:278489 59/311 (19%)