DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and GRIA1

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:471 Identity:93/471 - (19%)
Similarity:174/471 - (36%) Gaps:86/471 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 NNLQGREVIIAGFDYPPYTVIKHNMSTNAQDMGVSGESDFK-NVYIDGTETRIVLNFCEQFNCTI 269
            :::|.|..|:......||.::|.|            .:.|: |...:|....:.....:....:.
Human   412 SSVQNRTYIVTTILEDPYVMLKKN------------ANQFEGNDRYEGYCVELAAEIAKHVGYSY 464

  Fly   270 QIDSSAANDWGKVYPNMSG-DGALGMLINRKADICIGAMYSWYEDYTYLDLSMYLVRSGITCLVP 333
            :::..:...:|...|:... :|.:|.|:..:||:.:..:.........:|.|...:..||:.::.
Human   465 RLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIK 529

  Fly   334 APLRLTSWYLP-LEPFKETLWAAILLCLCAEATGLVLAYKSEQALYVLPGYREGWWTCTS----- 392
            .|.:....... |:|....:|..|:......:..|.|..:.....:....:.||....||     
Human   530 KPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNE 594

  Fly   393 FGVCTT--FKL--FISQSGNSKAYSLTVRVLLFACFLNDLIITSIYGGGLASILTIPSM----DE 449
            ||:..:  |.|  |:.|..:....||:.|::....:...|||.|.|...||:.||:..|    :.
Human   595 FGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES 659

  Fly   450 AADTV--------------TRLRFHRLQWAANSEAWV---SA-----IRASDEALVKDILYNFHI 492
            |.|..              |:..|.|.:.|...:.|.   ||     :|.::|.::: :..:...
Human   660 AEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIR-VRKSKGK 723

  Fly   493 YSDDELLRLAQDQHMRIGFTVERLPFGHFAIGNYLGPQAIDQLVIMKDDIYFQYTVAFVPRLWPL 557
            |:  .||....::::.     :|.|.....:|..|..:.              |.:| .|:...|
Human   724 YA--YLLESTMNEYIE-----QRKPCDTMKVGGNLDSKG--------------YGIA-TPKGSAL 766

  Fly   558 LDKLNTLIYSWHSSGFDKYWEYRVVADNLNLKIQQQVQETMTG---TKDIGPVPLGMSNFAGFII 619
            .:.:|..:...:..|         :.|.|..|......|..:|   :|| ....|.:||.||...
Human   767 RNPVNLAVLKLNEQG---------LLDKLKNKWWYDKGECGSGGGDSKD-KTSALSLSNVAGVFY 821

  Fly   620 VWILGSAIATLTFLLE 635
            :.|.|..:|.|..|:|
Human   822 ILIGGLGLAMLVALIE 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..399 CDD:107385
ANF_receptor 47..382 CDD:279440
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 77/424 (18%)
Lig_chan 548..827 CDD:278489 64/311 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156055
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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