DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and GRIA1

DIOPT Version :10

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_001244950.1 Gene:GRIA1 / 2890 HGNCID:4571 Length:916 Species:Homo sapiens


Alignment Length:471 Identity:93/471 - (19%)
Similarity:174/471 - (36%) Gaps:86/471 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 NNLQGREVIIAGFDYPPYTVIKHNMSTNAQDMGVSGESDFK-NVYIDGTETRIVLNFCEQFNCTI 269
            :::|.|..|:......||.::|.|            .:.|: |...:|....:.....:....:.
Human   412 SSVQNRTYIVTTILEDPYVMLKKN------------ANQFEGNDRYEGYCVELAAEIAKHVGYSY 464

  Fly   270 QIDSSAANDWGKVYPNMSG-DGALGMLINRKADICIGAMYSWYEDYTYLDLSMYLVRSGITCLVP 333
            :::..:...:|...|:... :|.:|.|:..:||:.:..:.........:|.|...:..||:.::.
Human   465 RLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIK 529

  Fly   334 APLRLTSWYLP-LEPFKETLWAAILLCLCAEATGLVLAYKSEQALYVLPGYREGWWTCTS----- 392
            .|.:....... |:|....:|..|:......:..|.|..:.....:....:.||....||     
Human   530 KPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNE 594

  Fly   393 FGVCTT--FKL--FISQSGNSKAYSLTVRVLLFACFLNDLIITSIYGGGLASILTIPSM----DE 449
            ||:..:  |.|  |:.|..:....||:.|::....:...|||.|.|...||:.||:..|    :.
Human   595 FGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIES 659

  Fly   450 AADTV--------------TRLRFHRLQWAANSEAWV---SA-----IRASDEALVKDILYNFHI 492
            |.|..              |:..|.|.:.|...:.|.   ||     :|.::|.::: :..:...
Human   660 AEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIR-VRKSKGK 723

  Fly   493 YSDDELLRLAQDQHMRIGFTVERLPFGHFAIGNYLGPQAIDQLVIMKDDIYFQYTVAFVPRLWPL 557
            |:  .||....::::.     :|.|.....:|..|..:.              |.:| .|:...|
Human   724 YA--YLLESTMNEYIE-----QRKPCDTMKVGGNLDSKG--------------YGIA-TPKGSAL 766

  Fly   558 LDKLNTLIYSWHSSGFDKYWEYRVVADNLNLKIQQQVQETMTG---TKDIGPVPLGMSNFAGFII 619
            .:.:|..:...:..|         :.|.|..|......|..:|   :|| ....|.:||.||...
Human   767 RNPVNLAVLKLNEQG---------LLDKLKNKWWYDKGECGSGGGDSKD-KTSALSLSNVAGVFY 821

  Fly   620 VWILGSAIATLTFLLE 635
            :.|.|..:|.|..|:|
Human   822 ILIGGLGLAMLVALIE 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
GRIA1NP_001244950.1 PBP1_iGluR_AMPA_GluR1 36..402 CDD:380613
PBP2_iGluR_AMPA_GluR1 416..797 CDD:270447 77/424 (18%)
Blue background indicates that the domain is not in the aligned region.

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