DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and Grin2c

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_036707.3 Gene:Grin2c / 24411 RGDID:2739 Length:1250 Species:Rattus norvegicus


Alignment Length:587 Identity:115/587 - (19%)
Similarity:209/587 - (35%) Gaps:130/587 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 AHIANESPESRNHFFEDQPNILFVVRDHS-SASSFDIKTNKFVGRKAENPSQMILVDRYLASEQR 193
            :|....|| :|..|:....|:.:..||.| |...:.::....|          |.::|:...|..
  Rat   332 SHPGPVSP-AREAFYRHLLNVTWEGRDFSFSPGGYLVRPTMVV----------IALNRHRLWEMV 385

  Fly   194 FQFGKSLFADKL-------NNLQ----GREVIIAGFDYPPYTVIKHNMSTNAQDMGVSG------ 241
            .::...:...|.       .:||    .|.:.:|..:..|:.:::      :.|.|..|      
  Rat   386 GRWDHGVLYMKYPVWPRYSTSLQPVVDSRHLTVATLEERPFVIVE------SPDPGTGGCVPNTV 444

  Fly   242 --ESDFKNVYIDGTETRIVLNFCEQFNCTIQIDSSAAN-----------DWGKVYPNMSG--DGA 291
              .....:.:..|..|......|:.| | |.|....|.           ..||....:.|  :|.
  Rat   445 PCRRQSNHTFSSGDLTPYTKLCCKGF-C-IDILKKLAKVVKFSYDLYLVTNGKHGKRVRGVWNGM 507

  Fly   292 LGMLINRKADICIGAMYSWYEDYTYLDLSMYLVRSGITCLVPAPLRLTSWYLPLEPFKETLWAAI 356
            :|.:..::||:.||::....|....:|.|:..|.:||:.:|.......|....|||:...:|..:
  Rat   508 IGEVYYKRADMAIGSLTINEERSEIIDFSVPFVETGISVMVSRSNGTVSPSAFLEPYSPAVWVMM 572

  Fly   357 -LLCLCAEA-TGLVLAYKSEQAL--YVLPGYREGWWTCT-SFGVCTTFKLFISQS---GNSKAYS 413
             ::||...| |..:..|.|..:.  .:..|.:.|..:.| ...|...:.|..:.|   .|.:..:
  Rat   573 FVMCLTVVAITVFMFEYFSPVSYNQNLTKGKKPGGPSFTIGKSVWLLWALVFNNSVPIENPRGTT 637

  Fly   414 LTVRVLLFACFLNDLIITSIYGGGLASILTIPSMDEAADTVTRL---RFHRLQWAANSEAWVSAI 475
            ..:.||::|.|.  :|..:.|...||:.:.   .::..|||:.|   :|.|.|.......:.:..
  Rat   638 SKIMVLVWAFFA--VIFLASYTANLAAFMI---QEQYIDTVSGLSDKKFQRPQDQYPPFRFGTVP 697

  Fly   476 RASDEALVKDILYNFHIYSDDELLRLAQDQHMRIGFTVERLPFGHF-------AIGNYL-GPQAI 532
            ..|.|..::....:.|.:......|..:|       .:..|..|..       |:.||: |....
  Rat   698 NGSTERNIRSNYRDMHTHMVKFNQRSVED-------ALTSLKMGKLDAFIYDAAVLNYMAGKDEG 755

  Fly   533 DQLVIMKDDIYFQ---YTVAFVPRLWPLLDKLNTLIYSWHSSGFDKYWE-------YRVVADNLN 587
            .:||.:.....|.   |.:|        :.|             |.:|:       .:::.|...
  Rat   756 CKLVTIGSGKVFATTGYGIA--------MQK-------------DSHWKRAIDLALLQLLGDGET 799

  Fly   588 LKI---------QQQVQETMTGTKDIGPVPLGMSNFAGFIIVWILGSAIATLTFLLELSLTYILK 643
            .|:         |.:..|.|:...||       .|.||...:.::...:|.|.|..|..:.:.|:
  Rat   800 QKLETVWLSGICQNEKNEVMSSKLDI-------DNMAGVFYMLLVAMGLALLVFAWEHLVYWKLR 857

  Fly   644 QS 645
            .|
  Rat   858 HS 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
Grin2cNP_036707.3 PBP1_iGluR_NMDA_NR2 41..397 CDD:380601 14/75 (19%)
PBP2_iGluR_NMDA_Nr2 413..813 CDD:270436 84/440 (19%)
NMDAR2_C 850..>925 CDD:402274 2/10 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350134
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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