DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and Grin3b

DIOPT Version :10

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:420 Identity:86/420 - (20%)
Similarity:143/420 - (34%) Gaps:140/420 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 GDGALGMLINRK-----ADICIGAMY------------SWYEDYT--YLDLSM-YLVRSGITCLV 332
            |||..|.|.:.:     .|:..|..:            |...|:|  :...|: .:||:..|.  
Mouse   581 GDGKYGALRDGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTRDTA-- 643

  Fly   333 PAPLRLTSWYLPLEPFKETLWAAILLCLCAEATGLVLAYKSEQALYVLP-GYREGWWTCTSFGVC 396
             :|:....|     |...::|..:...|...|..|.| |:......:.| |...|.....|..:.
Mouse   644 -SPIGAFMW-----PLHWSMWVGVFAALHLTALFLTL-YEWRSPYGLTPRGRNRGTVFSYSSALN 701

  Fly   397 TTFKLFISQSGNSKAYSL-TVRVL--LFACFLNDLIITSIYGGGLASILTIPSMDEAADTVTRLR 458
            ..:.:...::.:||.... |.|.|  |:|.|.  |::.|.|...||:::......|....:...:
Mouse   702 LCYAILFGRTVSSKTPKCPTGRFLMNLWAIFC--LLVLSSYTANLAAVMVGDKTFEELSGIHDPK 764

  Fly   459 FHR--------LQWAANSEAWVS----------------------AIRASD----EALVKD---I 486
            .|.        ..|.:::||::.                      |:..||    .|.:.|   :
Mouse   765 LHHPSQGFRFGTVWESSAEAYIKASFPEMHAHMRRHSAPTTPHGVAMLTSDPPKLNAFIMDKSLL 829

  Fly   487 LYNFHIYSDDELLRLAQDQHMRIGFTVERLPFGHFAIGNY-LGPQAIDQLVIMKDDIYFQYTVAF 550
            .|...|.:|.:||.:.:.                |||..| :|                      
Mouse   830 DYEVSIDADCKLLTVGKP----------------FAIEGYGIG---------------------- 856

  Fly   551 VPRLWPLLDKLNTLIYSWHSSGF-----DKYWEY-----RVVADNLNLKIQQQVQETMTGTKDIG 605
            :|:..||...|:..|..:.||||     ||:::.     ||.|          |.||:       
Mouse   857 LPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYKMVPCGKRVFA----------VTETL------- 904

  Fly   606 PVPLGMSNFAGFIIVWILGSAIATLTFLLE 635
              .:|:.:.:|..::..||...|.||.|.|
Mouse   905 --QMGVYHLSGLFVLLCLGLGSALLTSLGE 932

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 71/355 (20%)
Lig_chan 654..921 CDD:459656 62/326 (19%)
Blue background indicates that the domain is not in the aligned region.

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