DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and Grin2d

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:XP_036008580.1 Gene:Grin2d / 14814 MGIID:95823 Length:1345 Species:Mus musculus


Alignment Length:699 Identity:129/699 - (18%)
Similarity:231/699 - (33%) Gaps:251/699 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 GKYLNESTICIFWNDKFEFQLLHKSDYISFVGINIKSFDDNGGHYIIDTGLKKKELQNKHLFLDE 80
            |:.|:...:.|.|:::         ||         ||:::|  ::::..|              
Mouse   359 GESLHRYFMNITWDNR---------DY---------SFNEDG--FLVNPSL-------------- 389

  Fly    81 LVIKIIISIEVTHCETFVVFDKDIDRFVNAFNKASV---YSIWRSLHNKFVFAHIANESPESRNH 142
                ::||:  |...|:.|        |.::.:.::   |.:| |.:.:|:      :..:...|
Mouse   390 ----VVISL--TRDRTWEV--------VGSWEQQTLRLKYPLW-SRYGRFL------QPVDDTQH 433

  Fly   143 F----FEDQPNILF---------VVRDHSSASSFDIKTNKFVGRKAENPSQMILVDRYLASEQRF 194
            .    .|::|.::.         .:||.....|...:|:..|..::..|.         |.....
Mouse   434 LTVATLEERPFVIVEPADPISGTCIRDSVPCRSQLNRTHSLVAPRSPPPD---------APRPEK 489

  Fly   195 QFGKSLFADKLNNLQGREVIIAGFDYPPYTVIKHNMSTNAQDMGVSGESDFKNVYIDGTETRIVL 259
            :..|....|.|..|    ....||.|..|.|      ||    |..|:.      |||.      
Mouse   490 RCCKGFCIDILKRL----AHTIGFSYDLYLV------TN----GKHGKK------IDGV------ 528

  Fly   260 NFCEQFNCTIQIDSSAANDWGKVYPNMSGDGALGMLINRKADICIGAMYSWYEDYTYLDLSMYLV 324
                               |         :|.:|.:..::||:.||::....|....:|.|:..|
Mouse   529 -------------------W---------NGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFV 565

  Fly   325 RSGITCLV--------PAPLRLTSWYLP---LEPFKETLWAAI-LLCLCAEA-TGLVLAYKSEQA 376
            .:||:.:|        |:.....:|.:|   .||:...:|..: ::||...| |..:..|.|...
Mouse   566 ETGISVMVARSNGTVSPSAFLAFAWLMPPMSPEPYSPAVWVMMFVMCLTVVAVTVFIFEYLSPVG 630

  Fly   377 L--YVLPGYREGWWTCT-SFGVCTTFKLFISQS---GNSKAYSLTVRVLLFACFLNDLIITSIYG 435
            .  .:..|.|.|..|.| ...:...:.|..:.|   .|.:..:..:.||::|.|.  :|..:.|.
Mouse   631 YNRSLATGKRPGGSTFTIGKSIWLLWALVFNNSVPVENPRGTTSKIMVLVWAFFA--VIFLASYT 693

  Fly   436 GGLASILTIPSMDEAADTVTRL---RFHRLQWAANSEAWVSAIRASDEALVKDILYNFHIYSDDE 497
            ..||:.:.   .:|..|||:.|   :|.|.|.......:.:....|.|..::....:.|.|    
Mouse   694 ANLAAFMI---QEEYVDTVSGLSDRKFQRPQEQYPPLKFGTVPNGSTEKNIRSNYPDMHSY---- 751

  Fly   498 LLRLAQDQHMRIGFTVERLPFGHF-------AIGNYLG--------------------------- 528
            ::|..|.   |:...:.:|..|..       |:.||:.                           
Mouse   752 MVRYNQP---RVEEALTQLKAGKLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGYGIALH 813

  Fly   529 -------PQAIDQLVIMKDDIYFQYTVAFVPRLWPLLDKLNTLIYSWHSSGFDKYWEYRVVADNL 586
                   |..:..|..:.||     .:..:.|||     |:.:.:                    
Mouse   814 KGSRWKRPIDLALLQFLGDD-----EIEMLERLW-----LSGICH-------------------- 848

  Fly   587 NLKIQQQVQETMTGTKDIGPVPLGMSNFAGFIIVWILGSAIATLTFLLE 635
            |.||     |.|:...||       .|.||...:.::...::.|.|..|
Mouse   849 NDKI-----EVMSSKLDI-------DNMAGVFYMLLVAMGLSLLVFAWE 885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
Grin2dXP_036008580.1 Periplasmic_Binding_Protein_type1 <156..415 CDD:415822 16/103 (16%)
PBP2_iGluR_NMDA_Nr2 432..849 CDD:270436 96/521 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846591
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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