DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and GRIN3A

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_597702.2 Gene:GRIN3A / 116443 HGNCID:16767 Length:1115 Species:Homo sapiens


Alignment Length:574 Identity:116/574 - (20%)
Similarity:194/574 - (33%) Gaps:173/574 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   188 LASEQRF--------QFGKSLFADKLNNLQGREVII-------------AGFDYPP------YTV 225
            ::||..|        ..||.::. :|.:.||.::::             ..|.:|.      .|:
Human   457 VSSENNFFIWNLQHDPMGKPMWT-RLGSWQGGKIVMDYGIWPEQAQRHKTHFQHPSKLHLRVVTL 520

  Fly   226 IKHN--MSTNAQDMGV--SG--------------ESDFKNVYIDGTETRIVLNFCEQFNCTIQID 272
            |:|.  .:....|.|:  :|              :|.|.:::.......|....|....| |.:.
Human   521 IEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYC-IDLL 584

  Fly   273 SSAANDW-----------GK--VYPNMSGDGALGMLINRKADIC-----IGAMYSWYEDYT--YL 317
            ...|.|.           ||  .:.|....|.:|.|:...|.:.     |....|...|:|  :.
Human   585 EKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFF 649

  Fly   318 DLSM-YLVRSGITCLVPAPLRLTSWYLPLEPFKETLWAAILLCLCAEATGLVLAYKSEQALYVLP 381
            ..|: .|||:..|.   ||:....|     |...|:|..|.:.|...|..|.| |:.:....:.|
Human   650 STSLGILVRTRDTA---APIGAFMW-----PLHWTMWLGIFVALHITAVFLTL-YEWKSPFGLTP 705

  Fly   382 GYREGWWTCTSFGVCTTFKLFISQSGNSKAYSL--------------TVRVL--LFACFLNDLII 430
            ..|            ...|:|...|..:..|:|              |.|.|  |:|.|.  :..
Human   706 KGR------------NRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFC--MFC 756

  Fly   431 TSIYGGGLASILTIPSMDEAADTVTRLRFHRLQWAANSEAWVSAIRASDEALVKDILYNFHIYSD 495
            .|.|...||:::....:.|....:...:.|.   .:....:.:...:|.|..|:......|    
Human   757 LSTYTANLAAVMVGEKIYEELSGIHDPKLHH---PSQGFRFGTVRESSAEDYVRQSFPEMH---- 814

  Fly   496 DELLRLAQDQHMRIGFTVERLPFGHFAIGNYLGPQAIDQLVIMKDDIYFQYTVAF---------- 550
                     ::|| .:.|...|.|...:.|  .|:.:|..::  |.....|.|:.          
Human   815 ---------EYMR-RYNVPATPDGVEYLKN--DPEKLDAFIM--DKALLDYEVSIDADCKLLTVG 865

  Fly   551 -----------VPRLWPLLDKLNTLIYSWHSSGF-----DKYWEYRVVADNLNLKIQQQVQETMT 599
                       :|...||...::.||..:.|.||     ||:  ||||...   |....|.||: 
Human   866 KPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKW--YRVVPCG---KRSFAVTETL- 924

  Fly   600 GTKDIGPVPLGMSNFAGFIIVWILGSAIATLTFLLE-----LSLTYILKQSNLK 648
                    .:|:.:|:|..::..:|..::.||.:.|     |.|..|..:|.|:
Human   925 --------QMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQ 970

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
GRIN3ANP_597702.2 PBP1_iGluR_NMDA_NR3 30..497 CDD:107372 8/40 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 59..118
ANF_receptor 127..469 CDD:279440 3/11 (27%)
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 86/442 (19%)
Lig_chan 676..942 CDD:278489 63/315 (20%)
PPP2CB binding site. /evidence=ECO:0000250 951..987 6/20 (30%)
GIT1-binding. /evidence=ECO:0000250|UniProtKB:Q9R1M7 1062..1095
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156090
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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