DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir41a and grid2

DIOPT Version :9

Sequence 1:NP_995744.4 Gene:Ir41a / 2768714 FlyBaseID:FBgn0040849 Length:648 Species:Drosophila melanogaster
Sequence 2:XP_031759030.1 Gene:grid2 / 100487676 XenbaseID:XB-GENE-955038 Length:1007 Species:Xenopus tropicalis


Alignment Length:744 Identity:129/744 - (17%)
Similarity:247/744 - (33%) Gaps:258/744 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DLSWSLV--------LSAIVGKYLNESTICIFWNDKFEFQLLHKSDYISFVGINIKSFDDNGGHY 60
            |..|.::        :..:|.:.:...||.     :..|.:.|.|....|           .|::
 Frog   255 DCHWIIINEEINDLDVQELVRRSIGRLTII-----RQTFPVPHNSSQRCF-----------RGNH 303

  Fly    61 IIDTGL--------KKKELQNKHLFLDELVIKIIISIEVTHCETFVVFDKDIDRFVNAFNKASVY 117
            .|.|.|        :..|:.|.:::...|::                        .|||:|....
 Frog   304 RISTSLCDPKDPFSQNMEITNMYIYDTVLLL------------------------ANAFHKKLED 344

  Fly   118 SIWRSLHNKFVFAHIANESPESRNH-------------------FFED--QPNILFVVRDHSSAS 161
            ..|.|:.:.....  .|..|.....                   |.||  .|||.|.:       
 Frog   345 RKWHSMASLTCIR--KNSKPWQGGRSMLETVKKGGVSGLTGALDFSEDGGNPNIYFEI------- 400

  Fly   162 SFDIKTN--KFVGRKAE-----NPSQMI---LVDRYLASEQRFQFGKSLFADKLNNLQGREVIIA 216
               :.||  :.:||...     ||...:   |.||.|.                ||::|..:.:|
 Frog   401 ---LGTNYGEELGRGIRKLGFWNPVTGLNGSLTDRKLE----------------NNMRGVVLRVA 446

  Fly   217 GFDYPPYTVIKHNMSTNAQDMGVSGESDFKNVYIDGTETRIVLNFCEQF-NCTIQIDSSAANDWG 280
            .....|:.::..|:        :.....::...||      ||:....: ....:|..::.:.:|
 Frog   447 TVLEEPFVMVSENV--------LGKPKKYQGFSID------VLDALSSYLGFKYEIYVASDHKYG 497

  Fly   281 KVYPNMSGDGALGMLINRKADICIGAMYSWYE-----DYT--YLDLSMYLVRSGITCLVPAPLRL 338
            ....:.|.:|.:|.|:.::||:.|.|:....:     |:|  |:|.|:     |:  |:....:.
 Frog   498 SPQADGSWNGLIGELLLKRADMGISALTITPDRENVVDFTTRYMDYSV-----GV--LLRKAEKT 555

  Fly   339 TSWYLPLEPFKETLWAAILLCLCAEATGLVLAYKSEQALYVL-----PGYREGWWTCTSF--GVC 396
            ...:..|.||..:|||      |...|.|::..    .:|:|     |..:.|..|.|:.  .:.
 Frog   556 VDMFACLAPFDLSLWA------CIAGTVLLVGL----LVYLLNWLNPPRLQMGSMTSTTLYNSMW 610

  Fly   397 TTFKLFISQSGNSKAYSLTVRVLLFACFLNDLIITSIYGGGLASILTIPSMDEAADTVTRLRFHR 461
            ..:..|:.|.|.....:|..|:::.|.:|..||:.|.|...||:.|||..::.:..::..|.   
 Frog   611 FVYGSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAAFLTISRIESSIQSLQDLS--- 672

  Fly   462 LQWAANSEAWVSAIRASDEALVKDILYNFHIYSDDELLRLAQDQHMRI-GFT------------- 512
                          |.:|  :....:::..:|           :|:|: |..             
 Frog   673 --------------RQTD--IPYGTVFDSAVY-----------EHVRVKGMNPFERDSMYSQMWR 710

  Fly   513 ------------------VERLPFGHFAIGNYLGPQAIDQLVIMKDDIYFQYTVAFVPRLWPLLD 559
                              ::::..|::|   ::...|:.:.:.:.|.....|||.          
 Frog   711 MINRSNGSENNVQESLEGIQKVKHGNYA---FVWDAAVLEYIAINDQDCSFYTVG---------- 762

  Fly   560 KLNTLIYSWHSSGFDKYWEYRVVADNLNLKIQQ------------------QVQETMTGTKDIGP 606
              ||:....:.........||.:.....|::||                  ::..:| .||..|.
 Frog   763 --NTIADRGYGIALQHGSPYRDIFSQRILELQQNGDMDILKHKWWPRNGQCELHSSM-DTKQKGS 824

  Fly   607 VPLGMSNFAGFIIVWILGSAIATLTFLLE 635
             .|.:.:|:|...:...|..::....::|
 Frog   825 -SLDIKSFSGVFCILAAGIVLSCFIAMVE 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir41aNP_995744.4 None
grid2XP_031759030.1 Periplasmic_Binding_Protein_type1 28..429 CDD:415822 37/225 (16%)
PBP2_iGluR_delta_2 440..806 CDD:270449 77/441 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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