DRSC/TRiP Functional Genomics Resources

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Protein Alignment CCAP-R and npr-18

DIOPT Version :9

Sequence 1:NP_001368957.1 Gene:CCAP-R / 2768688 FlyBaseID:FBgn0039396 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001257085.1 Gene:npr-18 / 183408 WormBaseID:WBGene00008065 Length:476 Species:Caenorhabditis elegans


Alignment Length:406 Identity:94/406 - (23%)
Similarity:159/406 - (39%) Gaps:84/406 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 ILFTVIVLGNSAVLFVMFINKNRKSRMNY-----FIKQLALADLCVGLLNVLTDIIWRITISWRA 191
            :||.....||:|:|.|:...|.:..|..:     :|..|::.|. :.:|.:...||.:|...|..
 Worm    69 LLFMFGTCGNAAILAVVHHVKGQDPRSRHNTTLTYICILSIVDF-LSMLPIPMTIIDQILGFWMF 132

  Fly   192 GNLACKAIRFSQVCVTYSSTYVLVAMSIDRYDAITHPMNFSKSWKRARHLVAG-AWLISALFSLP 255
            ...|||..|..:......||::|||.|||||.|:.||:......:|...:..| .:.::.:...|
 Worm   133 DTFACKLFRLLEHIGKIFSTFILVAFSIDRYCAVCHPLQVRVRNQRTVFVFLGIMFFVTCVMLSP 197

  Fly   256 ILVLYEEKLIQGHP---------------QCWIELGSPIAWQVYMSLVSATL-FAIPALIISACY 304
            ||:....|.:..|.               :|..:||..:.  |..:|.|..| :.:|.|.:...|
 Worm   198 ILLYAHSKELVMHEKVDLDQEVITRMHLYKCVDDLGRELF--VVFTLYSFVLAYLMPLLFMIYFY 260

  Fly   305 AIIVKTIWAKGSIFVPT---ERAGFGAAPARRASSRGIIPRAKVKTVKMTLTIVFVFIICWSPY- 365
            ..::..::.:.::...|   .|:|       ....:..||...:..  .||.|.....|||:|| 
 Worm   261 YEMLIRLFKQANVIKQTLVGRRSG-------GEEKKLTIPVGHIAI--YTLAICSFHFICWTPYW 316

  Fly   366 --IIFDLLQVFGQIPHSQTNIAIATFI------QSLAPLNSAANPLIYCLFSSQVFRTLSRFPPF 422
              |::.|.:...|...|..:.....||      .:|..:|||:|.::|.|.:.|:.....|    
 Worm   317 ISILYSLYEELYQDTKSTASPPTYAFIYFMYGVHALPYINSASNFILYGLLNRQLHNAPER---- 377

  Fly   423 KWFTCCCKSYRN---NSQQNRCHTVGRR-----------------------LHNSCDSMRTLTTS 461
                   |..||   ..|.:...|...|                       :||:.::..:|..:
 Worm   378 -------KYTRNGVGGRQMSHALTTNTRPEYSELIAIPSSSCRPDSRVSAMIHNNNNNTESLPLA 435

  Fly   462 LTVSRRSTNKTNARVV 477
            ..:| ..|||.:|.:|
 Worm   436 QNIS-NMTNKDSATIV 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCAP-RNP_001368957.1 7tmA_NPSR 124..416 CDD:320325 78/317 (25%)
TM helix 1 126..150 CDD:320325 7/17 (41%)
TM helix 2 159..182 CDD:320325 4/27 (15%)
TM helix 3 197..219 CDD:320325 7/21 (33%)
TM helix 4 240..256 CDD:320325 1/16 (6%)
TM helix 5 282..305 CDD:320325 6/23 (26%)
TM helix 6 348..370 CDD:320325 9/24 (38%)
TM helix 7 384..409 CDD:320325 9/30 (30%)
npr-18NP_001257085.1 7tm_classA_rhodopsin-like 63..368 CDD:381740 77/310 (25%)
TM helix 1 63..87 CDD:381740 7/17 (41%)
TM helix 2 101..122 CDD:381740 4/21 (19%)
TM helix 3 138..160 CDD:381740 7/21 (33%)
TM helix 4 182..198 CDD:381740 1/15 (7%)
TM helix 5 238..261 CDD:381740 6/22 (27%)
TM helix 6 291..320 CDD:381740 10/30 (33%)
TM helix 7 343..368 CDD:381740 8/24 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1034048at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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