DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LpR1 and vldlr

DIOPT Version :9

Sequence 1:NP_001097934.2 Gene:LpR1 / 2768687 FlyBaseID:FBgn0066101 Length:1076 Species:Drosophila melanogaster
Sequence 2:XP_005155618.1 Gene:vldlr / 393897 ZFINID:ZDB-GENE-040426-803 Length:877 Species:Danio rerio


Alignment Length:925 Identity:386/925 - (41%)
Similarity:517/925 - (55%) Gaps:110/925 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 ATCSSDQFRCGNGNCIPNKWRCDQESDCADGSDEANELCM-NACPNNEFKCQTVDQCIPRSWLCD 240
            |.|...||:||||.|||:.|:||.:.||:|||||.:  |: ..|...:|.|:: .||||:.|.||
Zfish    27 AECEQSQFQCGNGRCIPSVWQCDGDMDCSDGSDETS--CVRKTCAEVDFVCRS-GQCIPKRWQCD 88

  Fly   241 GSNDCRDKSDEA--HCRARTCSPDEYACKSGEGQCVPLAWMCDQSKDCSDGSDEHNC-NQTCRAD 302
            |..||.|.|||:  .|..|||..:|::|..|..||:|:.|.||..|||.:|.||.|| |.||...
Zfish    89 GEPDCEDGSDESIEMCHTRTCRVNEFSCGVGSTQCIPVFWKCDGEKDCDNGEDEINCGNITCAPL 153

  Fly   303 EFTCGNGRCIQKRWKCDHDDDCGDGSDEKECPVVPCDSVAEHTCTNGACIAKRWVCDGDPDCSDG 367
            ||||.:|||:.:::.|:.:|||||||||::|....| |.:|..|.|..||.:.|:||.|.||.|.
Zfish   154 EFTCSSGRCVSRKFVCNGEDDCGDGSDEQDCAPSSC-SPSEIPCGNNTCIPRSWLCDDDVDCQDQ 217

  Fly   368 SDE--RSCANVTKTTTPCLSHEYQCKDRITCLHHSWLCDGDRDCPDGDDEHTANCKNVTCRADQF 430
            |||  ..|.:.......|...|.||... .|:|..|.||||.||.||.||  .||....||.|||
Zfish   218 SDESPERCGHNPTPPAKCSPSEMQCGSG-ECIHRKWRCDGDPDCKDGSDE--KNCSARNCRPDQF 279

  Fly   431 QCGDRSCIPGHLTCNGDKDCADGSDERDCGLSLSLGINQGGCNATSEFDCGGGQCVPLSKVCDKR 495
            :|.|.|||.|...|||.:||.||:||.:|.       |...||::.:|.|..|:|:.:||||:|.
Zfish   280 KCDDGSCIHGSRQCNGFRDCVDGTDEVNCK-------NLTQCNSSDQFKCRSGECIEMSKVCNKV 337

  Fly   496 KDCPDGEDEPAGKCGINECASKNGGCMHQCIDLKVGHHCECHEGYKLSPDKRNCQDINECEVPGK 560
            :||||..|||..:|.:|||...||||.|.|.||.:|..|:|..|.:|. |::.|.|:|||..||.
Zfish   338 RDCPDWSDEPIKECNMNECLINNGGCSHICRDLTIGFECDCTPGLQLI-DRKTCGDVNECLNPGI 401

  Fly   561 CSQICVNEIGGFKCECEAGYMRDPKNHTRCKASEGHASLLLARRHDIRKIALDHMEMTSIVNSTK 625
            |||||:|..||:||||..||..||.... |||......|:...|.||||:.|:..|.|.||...:
Zfish   402 CSQICINLKGGYKCECHNGYQMDPTTGV-CKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLR 465

  Fly   626 AATALDFVFRTGMIFWSDVTTQSIYKAPIDEGNEKTVVLTKSSVTSD-----GLAVDWIYNHVYF 685
            ...|||..|...||||:|:..::|:...:|:.:|     :...|..|     |:||||||.::|:
Zfish   466 NTVALDADFIQQMIFWADLGQKAIFSTVLDKQDE-----SHKKVIDDVQMPVGIAVDWIYKNIYW 525

  Fly   686 TDTHKCTIELTNFEGSMGKVLVKDSLDIPRSIALDPIEGWMYWSDWGASPRIERAGMDGSHRTTI 750
            :|....:|.:.||.|:..|||....|..|.|||:||:.|::||||||...:||::||:|:.|..:
Zfish   526 SDLGSKSITVANFNGTKKKVLFNSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGNDRQVL 590

  Fly   751 ISYDVKWPNGITLDLVKKRIYWVDGKLNVISSANYDGSQRSQVLYSGEYLRHPFSITTFEDNVYW 815
            :..|::|||||||||:|.|:||||.||:::.|.:.:|..|.:||.|.:||.|||::|.|||.|:|
Zfish   591 VETDIQWPNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLAHPFALTVFEDRVFW 655

  Fly   816 TDWDKQAVFKANKFTGEDVEPVTAMHMLQHPMVVHVYHPYRQPDGVNHC--QSVNGHCSHLCLPA 878
            ||.:.:|::.||||||.||..:.:  .|..|..:.|||...|..|.|.|  :..||.||.:||||
Zfish   656 TDGENEAIYGANKFTGSDVTLLAS--NLNEPQDIIVYHELIQLSGTNWCNEKMENGGCSFMCLPA 718

  Fly   879 PRINERSPRISCACPTGLKLMVDGLMCVEDPLYLPPVTRPPRARKTKPRPKSPRRRLPTGVQVGH 943
            |:||:.||:.:|.||.|..|..|||.|              ||..|...|:              
Zfish   719 PQINKHSPKYTCVCPEGQTLASDGLRC--------------RAEATSAAPQ-------------- 755

  Fly   944 ADIRIEINDDLQLSTRLPLLP----TTFVADQRPVKNHTQIEKTTTPSEQPDSGFIALVVIASLS 1004
                    |..|::|| |..|    .:.||.: ||  ||:...:|:..|          |..|..
Zfish   756 --------DGGQVTTR-PSHPKASSVSKVASE-PV--HTEGNLSTSIHE----------VNTSAR 798

  Fly  1005 GFA---VLLSVLLLI-----GY---RYCSKRRINSMNFENPIYRKTTTTEDHFSLRKNLPARIYD 1058
            |.|   .:|.||||.     ||   |....:...||||:||:|.|||        .::|...|..
Zfish   799 GSAAAWAILPVLLLAMAAAGGYLMWRNWQIKNKKSMNFDNPVYLKTT--------EEDLNIDISR 855

  Fly  1059 HTSVMDEEYSPVIGI 1073
            |::.:...| |.|.:
Zfish   856 HSASVGHTY-PAISM 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR1NP_001097934.2 LDLa 135..167 CDD:197566
LDLa 178..210 CDD:197566 18/31 (58%)
LDLa 219..254 CDD:238060 17/36 (47%)
LDLa 259..295 CDD:238060 16/35 (46%)
LDLa 343..373 CDD:238060 15/31 (48%)
LDLa 383..415 CDD:197566 15/31 (48%)
Ldl_recept_a 423..459 CDD:278486 20/35 (57%)
LDLa 476..504 CDD:197566 13/27 (48%)
FXa_inhibition 514..549 CDD:291342 15/34 (44%)
EGF_CA 551..581 CDD:214542 19/29 (66%)
LY 662..702 CDD:214531 15/44 (34%)
LY 704..747 CDD:214531 22/42 (52%)
LY 749..790 CDD:214531 20/40 (50%)
FXa_inhibition 864..905 CDD:291342 22/42 (52%)
vldlrXP_005155618.1 LDLa 29..63 CDD:238060 20/35 (57%)
LDLa 67..99 CDD:197566 15/32 (47%)
Ldl_recept_a 107..145 CDD:278486 18/37 (49%)
Ldl_recept_a 149..184 CDD:278486 19/34 (56%)
Ldl_recept_a 234..269 CDD:278486 17/37 (46%)
Ldl_recept_a 272..308 CDD:278486 20/35 (57%)
LDLa 316..346 CDD:238060 13/29 (45%)
FXa_inhibition 356..390 CDD:291342 15/34 (44%)
EGF_CA 392..426 CDD:214542 21/33 (64%)
NHL 479..>570 CDD:302697 35/95 (37%)
LY 504..541 CDD:214531 14/36 (39%)
NHL repeat 511..551 CDD:271320 16/39 (41%)
Ldl_recept_b 564..604 CDD:278487 20/39 (51%)
LY 588..630 CDD:214531 20/41 (49%)
Ldl_recept_b 651..690 CDD:278487 16/40 (40%)
FXa_inhibition 707..745 CDD:291342 21/37 (57%)
Mucin <723..817 CDD:250634 38/143 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10830
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H443
Inparanoid 1 1.050 720 1.000 Inparanoid score I618
OMA 1 1.010 - - QHG49125
OrthoDB 1 1.010 - - D179614at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6597
orthoMCL 1 0.900 - - OOG6_103130
Panther 1 1.100 - - O PTHR24270
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7933
SonicParanoid 1 1.000 - - X1052
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1212.010

Return to query results.
Submit another query.