DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LpR1 and cue

DIOPT Version :9

Sequence 1:NP_001097934.2 Gene:LpR1 / 2768687 FlyBaseID:FBgn0066101 Length:1076 Species:Drosophila melanogaster
Sequence 2:NP_612113.2 Gene:cue / 38174 FlyBaseID:FBgn0011204 Length:644 Species:Drosophila melanogaster


Alignment Length:560 Identity:129/560 - (23%)
Similarity:195/560 - (34%) Gaps:160/560 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   606 DIRKIALDHMEMTSIVNSTKAATALDFVFRTGMIFWSDVTTQSIYKAPIDEGNEKTVVLTKSSVT 670
            ::..:..|..|.....|..|......|..:..:|..:.|..|:|.:.    |||..         
  Fly    60 ELSALTFDESEELIYFNDLKHRNGSIFSLKRDLIAANHVAEQTIART----GNESV--------- 111

  Fly   671 SDGLAVDWIYNHVYFTDTHKCTIELTNFEGS-MGKVLVKDSLD--IPRSIALDPIEGWMYWSDWG 732
             .|||.|.:..:::::||.:..|......|| ..:|||..|.:  .|..:|:|.....:||::..
  Fly   112 -GGLAYDPLNMNLFWSDTEQRKIFFAPIHGSATPQVLVDLSAEGGRPDGVAVDVCRRKLYWTNSN 175

  Fly   733 AS-PRIERAGMDGSHRTTIISYDVKWPNGITLDLVKKRIYWVD---GKLNVISSANYDGSQRSQV 793
            .: |.:||..:|||:||.|||.::..|.||.:|.:..|::|:|   |....:.|:..|||.|..|
  Fly   176 VTHPTVERINLDGSNRTVIISSNIDMPRGIVVDQLSDRLFWIDDLKGVFFSVESSKLDGSDRQVV 240

  Fly   794 LYSGEYLRHPFSITTFEDNVYWTD------WD--KQAVFKANKFTGEDVEPVTAMHMLQHP---- 846
            |....:  .|.::....|.:||||      |.  |..|.|....:..|.|..|.....:.|    
  Fly   241 LKDKHH--EPLNLAVTNDAIYWTDRTTRAVWSHPKVPVIKVTTTSKPDEEDSTDSTDFKDPEPVA 303

  Fly   847 ---MVVHVYHPYRQPDGV-------------NHCQSVNGHCSHLCLPAPRINERSPRIS------ 889
               .:|.|.:...:..|:             :||.|:......      |::|:|.:..      
  Fly   304 EDCPLVRVANLSEEARGIVARTGFYQRLQKDHHCASIVRKVKE------RVDEQSRKFEIRSLLD 362

  Fly   890 -----------------------CACPTGLK-----------LMVDGLMCVEDPLYLPPVTRPP- 919
                                   |.||||.|           ..|.| .|....|..|.....| 
  Fly   363 QKIKVLEDERCMNDGEYRAATDLCICPTGFKGSRCEIRECHNYCVHG-TCQMSELAYPKCYCQPG 426

  Fly   920 -------------------RARKTKPRPKSPRRRLPTGVQVGHADIRIEINDDLQLSTRL----P 961
                               ..|.:|...::|....|  .:.|.|.......:...|..||    |
  Fly   427 FKGERCELSVCSGLCLNGGHCRVSKDENEAPSCECP--AKFGGARCEQNSTEICSLFCRLLKHEP 489

  Fly   962 LLPTTF----VADQRPVKNHTQI--------EKTTTPSEQPDSGFIALVV--IASLSGFAVLLSV 1012
            .:...|    :.::....|.|.|        |...||.....|..|.|||  ::||     ||..
  Fly   490 EMYVPFGCHSICEELAQDNSTNIAIPQYQHLEVCLTPRVWTSSVIIILVVGIVSSL-----LLVA 549

  Fly  1013 LLLIGYR--YCSKRRINSMNFENPIYRKTTTTEDHFSLRK 1050
            :::.|.|  |..||         |..|||      |.:||
  Fly   550 VIVQGIRRLYKPKR---------PRIRKT------FVVRK 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR1NP_001097934.2 LDLa 135..167 CDD:197566
LDLa 178..210 CDD:197566
LDLa 219..254 CDD:238060
LDLa 259..295 CDD:238060
LDLa 343..373 CDD:238060
LDLa 383..415 CDD:197566
Ldl_recept_a 423..459 CDD:278486
LDLa 476..504 CDD:197566
FXa_inhibition 514..549 CDD:291342
EGF_CA 551..581 CDD:214542
LY 662..702 CDD:214531 9/40 (23%)
LY 704..747 CDD:214531 15/45 (33%)
LY 749..790 CDD:214531 15/43 (35%)
FXa_inhibition 864..905 CDD:291342 13/80 (16%)
cueNP_612113.2 LY 101..141 CDD:214531 12/53 (23%)
Ldl_recept_b 167..208 CDD:278487 16/40 (40%)
LY 193..237 CDD:214531 15/43 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461678
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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