DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LpR1 and yl

DIOPT Version :9

Sequence 1:NP_001097934.2 Gene:LpR1 / 2768687 FlyBaseID:FBgn0066101 Length:1076 Species:Drosophila melanogaster
Sequence 2:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster


Alignment Length:817 Identity:245/817 - (29%)
Similarity:352/817 - (43%) Gaps:225/817 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 GTPLGIGQSLEAKCDEKQFQCHSGDCIPIRFVCDGDADCKDHSDEQIKECKFIEATCSSDQFRCG 187
            ||..|...|.:.:||..||||..|.||....:|||..||||                |||:..|.
  Fly    77 GTAAGTPGSADTRCDAGQFQCRDGGCILQAKMCDGRGDCKD----------------SSDELDCD 125

  Fly   188 NGNCIPNKWRCDQESDCADGSDEANELCMNACPNNEFKC-QTVDQCIPRSWLCDGSNDCRDKSDE 251
            ...|.|..|                           |.| |....|:....:|:|.::|....||
  Fly   126 YRLCRPPHW---------------------------FPCAQPHGACLAAELMCNGIDNCPGGEDE 163

  Fly   252 AHC-------------RARTCSPDEYACKSGEGQCVPLAWMCDQSKDCSDGSDEHNCNQTCRADE 303
            .:|             |.|:||..|:.|:. :..|:|:.:|||...||:|.|||   ...|:..|
  Fly   164 LNCPVRPGFRFGDTAHRMRSCSKYEFMCQQ-DRTCIPIDFMCDGRPDCTDKSDE---VAGCKQAE 224

  Fly   304 FTCGNGRCIQKRWKCDHDDDCGDGSDEKECPVVPCDSVAEHTCTNGACI-AKRWVCDGDPDCSDG 367
            .||.                 |:|                |.|.||.|: .|:|||||..||.||
  Fly   225 ITCP-----------------GEG----------------HLCANGRCLRRKQWVCDGVDDCGDG 256

  Fly   368 SDERSCANVTKTTTPCLSHEYQCKDRITCLHHSWLCDGDRDCPDGDDEHTANCKNVTCRADQFQC 432
            ||||.|.|:.:..    ..::.|::|.|||..|.:|||..||.||.||..               
  Fly   257 SDERGCLNLCEPQ----KGKFLCRNRETCLTLSEVCDGHSDCSDGSDETD--------------- 302

  Fly   433 GDRSCIPGHLTCNGDKDCADGSDERDCGLSLSLGINQGGCNATSEFDCGGGQC--VPLSKVCDKR 495
                      .|:...||    |.:.|.|                    |.:|  :|.|      
  Fly   303 ----------LCHSKPDC----DAKKCAL--------------------GAKCHMMPAS------ 327

  Fly   496 KDCPDGEDEPAGKCGINECASKNGGCMHQCIDLKVGHHCECHEGYKLSPDKRNCQDINEC-EVPG 559
                                               |..|.|.:|::|:..:..|:|::|| |...
  Fly   328 -----------------------------------GAECFCPKGFRLAKFEDKCEDVDECKEQDD 357

  Fly   560 KCSQICVNEIGGFKCECEAGYMRDPKNHTRCKA-----SEGHASLLLARRHDIRKIALDHMEMTS 619
            .|||.|.|..||::|.|:|||:.|..|.| |:|     .|....||...:..|..:   |:...:
  Fly   358 LCSQGCENTSGGYRCVCDAGYLLDKDNRT-CRAVVYGSKEQQPLLLYTTQMTIMGM---HLREDN 418

  Fly   620 IVN-----STKAATALDFVFRTGMIFWSDV--TTQSIYKAPIDEGNEKTVVLTKSSVTSDGLAVD 677
            :.|     :...:..:...:....|:|:::  ..:||.||..| |:...::||......:.||||
  Fly   419 VRNHVYQVAGNLSKVIGVAYDGSHIYWTNIQNEAESIVKANGD-GSNAEILLTSGLDAPEDLAVD 482

  Fly   678 WIYNHVYFTDTHKCTIELTNFEGSMGKVLVKDSLDIPRSIALDPIEGWMYWSDWGASPRIERAGM 742
            |:..::||:|.....|.:.:.:|....|||...:..|||:|:.|.:|.|:|:|||..|.|.||.|
  Fly   483 WLTQNIYFSDNIMRHIAVCSNDGLNCAVLVTQDVHQPRSLAVWPQKGLMFWTDWGEKPMIGRASM 547

  Fly   743 DGSHRTTIISYDVKWPNGITLDLVKKRIYWVDGKLNVISSANYDGSQRSQVLYSGEYLRHPFSIT 807
            |||....|:|.:::|||||.||:.::||||||.||..:.:...||:.|..||  ...|:||:.:.
  Fly   548 DGSRSRPIVSDNIEWPNGIALDMHQQRIYWVDAKLGSVQTVRPDGTGRRTVL--DGMLKHPYGLA 610

  Fly   808 TFEDNVYWTDWDKQAVFKANKFTGEDVEPVTAMHMLQHPMVVHVYHPYRQPDGVNHCQSVNGHCS 872
            .|||.:||:||..::|...:||:|:|...:.....:   ..||:|||.:||:..:.|:  |..||
  Fly   611 IFEDQLYWSDWATKSVHACHKFSGKDHRILAKDRTI---YAVHIYHPAKQPNSPHGCE--NATCS 670

  Fly   873 HLCLPAPRINERSPRI---SCACPTGLKLMVDGLMCV 906
            ||||.|      .|.|   |||||.|::|..|...|:
  Fly   671 HLCLLA------EPEIGGHSCACPDGMRLAPDHRRCM 701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR1NP_001097934.2 LDLa 135..167 CDD:197566 16/31 (52%)
LDLa 178..210 CDD:197566 7/31 (23%)
LDLa 219..254 CDD:238060 9/35 (26%)
LDLa 259..295 CDD:238060 15/35 (43%)
LDLa 343..373 CDD:238060 19/30 (63%)
LDLa 383..415 CDD:197566 13/31 (42%)
Ldl_recept_a 423..459 CDD:278486 4/35 (11%)
LDLa 476..504 CDD:197566 4/29 (14%)
FXa_inhibition 514..549 CDD:291342 5/34 (15%)
EGF_CA 551..581 CDD:214542 15/30 (50%)
LY 662..702 CDD:214531 12/39 (31%)
LY 704..747 CDD:214531 22/42 (52%)
LY 749..790 CDD:214531 19/40 (48%)
FXa_inhibition 864..905 CDD:291342 19/43 (44%)
ylNP_996433.1 LDLa 90..124 CDD:238060 19/49 (39%)
LDLa 131..166 CDD:238060 11/61 (18%)
LDLa 184..216 CDD:238060 13/32 (41%)
LDLa 227..262 CDD:238060 22/67 (33%)
LDLa 271..302 CDD:238060 15/30 (50%)
FXa_inhibition 352..387 CDD:291342 17/35 (49%)
Ldl_recept_b 442..482 CDD:278487 12/40 (30%)
LY 466..508 CDD:214531 12/41 (29%)
Ldl_recept_b 529..569 CDD:278487 21/39 (54%)
LY 553..595 CDD:214531 19/41 (46%)
LY 596..637 CDD:214531 16/42 (38%)
FXa_inhibition 669..700 CDD:291342 17/36 (47%)
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060
LDLa 1118..1152 CDD:238060
LDLa 1157..1189 CDD:197566
LDLa 1198..1232 CDD:238060
LDLa 1243..1279 CDD:238060
LDLa 1283..1318 CDD:238060
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:291342
EGF_CA 1418..1452 CDD:214542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468398
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002088
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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