DRSC/TRiP Functional Genomics Resources

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Protein Alignment LpR1 and Vldlr

DIOPT Version :10

Sequence 1:NP_001097934.2 Gene:LpR1 / 2768687 FlyBaseID:FBgn0066101 Length:1076 Species:Drosophila melanogaster
Sequence 2:NP_038731.2 Gene:Vldlr / 22359 MGIID:98935 Length:873 Species:Mus musculus


Alignment Length:374 Identity:72/374 - (19%)
Similarity:122/374 - (32%) Gaps:114/374 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 CATRLQKEFSNYIRCVRAVQNASKSLMEAITEVYESQWTGSEVLYGQAKTIDTQYQQF--SYKLA 114
            |.|.:.::.:..:|....::..||:.::.......|....|..|..:.|.....|..|  ||::|
Mouse   174 CVTVVYEDSTGLMRMQELIKAPSKNNLKIRIRQLPSGGGDSRPLLKEMKKEKEFYVIFDCSYQVA 238

  Fly   115 DQVLKQ-----------------LDTYALQFPEMKKKIDKRGRKLVDYDSQRHSFQSLQANAAKR 162
            .::|||                 ||.:||                 |.:..|:|..::.|.....
Mouse   239 AELLKQLMSMGMMTEYYHFFFTTLDLFAL-----------------DLEPYRYSGVNMTAFRLLN 286

  Fly   163 KDDLKVT------RGREQLEEAKSTYEVLNSELHDELPALYDSRIL----------FLVTNLQ-- 209
            .||..|.      ....||...|....:::..:......:||:..:          ..|::||  
Mouse   287 LDDSYVASVIQKWSMERQLAPPKPESGLMSGIMTTAAALMYDAVFMVAVASQRATQMTVSSLQCH 351

  Fly   210 ------------TLFACEQQFHSETSKVYAELEAIVDKLATESQRGSYTLKKINANSN------- 255
                        .||. |.|:...|.::      :::|  |:..|..:.|..|:...:       
Mouse   352 RHKPWRYGPRFMNLFK-EAQWDGLTGRI------VLNK--TDGLRKEFNLDLISLKEDGTAKRVA 407

  Fly   256 --PSSPQQ---------SPVKANLSIV---NNVTNGSANANGRAATTDLPPGVLYRV--KATY-- 302
              .|.|.:         |....||:.:   .|:|:..||......|....|.|:|:.  |..|  
Mouse   408 DGASRPNKLWTKIGVWNSYTGLNLTEIKDNKNITDSLANRTLIVTTILENPYVMYKKSDKVLYGN 472

  Fly   303 ----KYVREDVDELSFEVGDVINVVEYEDPEDQEEGWLMGNKEGTNEKG 347
                .|..:.:.|||..:|....|....|          |.....|:||
Mouse   473 DRFEGYCLDLLKELSNILGFTYEVKLVTD----------GKYGAQNDKG 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR1NP_001097934.2 LDLa 135..167 CDD:197566 6/31 (19%)
LDLa 178..210 CDD:197566 6/55 (11%)
LDLa 219..254 CDD:238060 6/34 (18%)
LDLa 259..295 CDD:238060 10/47 (21%)
LDLa 343..373 CDD:238060 3/5 (60%)
LDLa 383..415 CDD:197566
Ldl_recept_a 423..459 CDD:395011
LDLa 476..504 CDD:197566
FXa_inhibition 514..549 CDD:464251
EGF_CA 551..581 CDD:214542
LY 662..702 CDD:214531
LY 704..747 CDD:214531
LY 749..790 CDD:214531
Ldl_recept_b 769..815 CDD:459654
FXa_inhibition 864..905 CDD:464251
VldlrNP_038731.2 LDLa 33..67 CDD:238060
LDLa 71..103 CDD:197566
Ldl_recept_a 111..149 CDD:395011
Ldl_recept_a 153..188 CDD:395011 2/13 (15%)
Ldl_recept_a 192..224 CDD:395011 6/31 (19%)
Ldl_recept_a 237..273 CDD:395011 9/52 (17%)
Ldl_recept_a 276..312 CDD:395011 7/35 (20%)
Ldl_recept_a 320..350 CDD:395011 4/29 (14%)
FXa_inhibition 360..394 CDD:464251 9/42 (21%)
EGF_CA 396..426 CDD:214542 2/29 (7%)
LDL-receptor class B 1 439..480 11/40 (28%)
LDL-receptor class B 2 481..524 10/41 (24%)
Ldl_recept_b 481..522 CDD:459654 10/41 (24%)
LDL-receptor class B 3 525..567
Ldl_recept_b 527..565 CDD:459654
LDL-receptor class B 4 568..611
Ldl_recept_b 568..608 CDD:459654
LY 592..634 CDD:214531
LDL-receptor class B 5 612..654
LDL-receptor class B 6 655..697
Ldl_recept_b 655..695 CDD:459654
FXa_inhibition 706..749 CDD:464251
Clustered O-linked oligosaccharides 751..790
Endocytosis signal. /evidence=ECO:0000255 832..837
Blue background indicates that the domain is not in the aligned region.

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