DRSC/TRiP Functional Genomics Resources

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Protein Alignment LpR1 and lrp-1

DIOPT Version :9

Sequence 1:NP_001097934.2 Gene:LpR1 / 2768687 FlyBaseID:FBgn0066101 Length:1076 Species:Drosophila melanogaster
Sequence 2:NP_001379135.1 Gene:lrp-1 / 172520 WormBaseID:WBGene00003071 Length:4753 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LpR1NP_001097934.2 LDLa 135..167 CDD:197566
LDLa 178..210 CDD:197566
LDLa 219..254 CDD:238060
LDLa 259..295 CDD:238060
LDLa 343..373 CDD:238060
LDLa 383..415 CDD:197566
Ldl_recept_a 423..459 CDD:278486
LDLa 476..504 CDD:197566
FXa_inhibition 514..549 CDD:291342
EGF_CA 551..581 CDD:214542
LY 662..702 CDD:214531
LY 704..747 CDD:214531
LY 749..790 CDD:214531
FXa_inhibition 864..905 CDD:291342
lrp-1NP_001379135.1 LDLa 53..87 CDD:238060
LDLa 92..131 CDD:238060
LDLa 140..173 CDD:238060
LDLa 182..216 CDD:238060
LDLa 223..257 CDD:238060
LDLa 262..297 CDD:238060
LY 463..505 CDD:214531
LY 507..546 CDD:214531
LY 547..589 CDD:214531
LY 883..925 CDD:214531
exchanger_TraA <1054..1451 CDD:411343
LDLa 1057..1087 CDD:197566
LDLa 1146..1177 CDD:197566
LDLa 1187..1219 CDD:238060
LDLa 1228..1263 CDD:238060
LDLa 1270..1302 CDD:238060
LDLa 1313..1344 CDD:238060
FXa_inhibition 1447..1475 CDD:405372
LY 1511..1545 CDD:214531
LY 1548..1585 CDD:214531
LY 1590..1634 CDD:214531
LY 1635..1677 CDD:214531
Ldl_recept_b 1943..1986 CDD:423042
LY 1971..2012 CDD:214531
LY 2015..2052 CDD:214531
LY 2193..2239 CDD:214531
LY 2240..2283 CDD:214531
LY 2284..2325 CDD:214531
LY 2570..2612 CDD:214531
LY 2613..2655 CDD:214531
LDLa 2794..2824 CDD:197566
LDLa 2834..2868 CDD:238060
LDLa 2874..2907 CDD:197566
LDLa 2961..2994 CDD:238060
LDLa 3012..3038 CDD:238060
LDLa 3048..3088 CDD:197566
LDLa 3099..3131 CDD:197566
LDLa 3140..3174 CDD:238060
LDLa 3186..3218 CDD:197566
FXa_inhibition 3276..3305 CDD:405372
LY 3382..3424 CDD:214531
Ldl_recept_b 3445..3490 CDD:395012
LY 3476..3516 CDD:214531
FXa_inhibition 3586..3623 CDD:405372
LDLa 3627..3660 CDD:197566
LDLa 3671..3705 CDD:238060
LDLa 3792..3825 CDD:197566
LDLa 3837..3868 CDD:238060
LDLa 3878..3912 CDD:238060
LDLa 3917..3951 CDD:238060
LDLa 3958..3990 CDD:197566
LDLa 4049..4083 CDD:238060
FXa_inhibition 4097..>4121 CDD:405372
EGF_CA 4132..4163 CDD:214542
NHL 4219..>4431 CDD:302697
NHL repeat 4219..4257 CDD:271320
NHL repeat 4267..4330 CDD:271320
NHL repeat 4333..4371 CDD:271320
NHL repeat 4373..4410 CDD:271320
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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