DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mld and CG1602

DIOPT Version :9

Sequence 1:NP_001247289.1 Gene:mld / 2768685 FlyBaseID:FBgn0263490 Length:1965 Species:Drosophila melanogaster
Sequence 2:NP_610291.2 Gene:CG1602 / 35684 FlyBaseID:FBgn0033186 Length:577 Species:Drosophila melanogaster


Alignment Length:611 Identity:129/611 - (21%)
Similarity:215/611 - (35%) Gaps:129/611 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1363 LKCRFCHNGPRFSSSLEYSRHIIDLHPAVAPFNCPHCPMAFAGRTKRSQHI--------LSHHVV 1419
            ::|.:|......:...|:..||.::|..|........|:  ...:..|.|:        ....:.
  Fly    18 MRCSYCPTDVEVAQWQEFVLHIRNVHSKVRSMEDDFEPV--GENSTESGHVDPPEEKPQAEESIF 80

  Fly  1420 QQYQC--GQCSHV-FPAQKALDVHIQRFHMTLKTDPSGAVKVEDVQLQITSERRPRGRPYKPRLQ 1481
            ||.:.  |.|..: ..|.::.....:...::|.||...:|:.||              |.:|.|.
  Fly    81 QQDESADGACVQLHIDAVRSSTNETEESDVSLVTDEEESVQDED--------------PSEPALD 131

  Fly  1482 LQQHQLQPQQKLQVQQHQQQQKALQQLP-QAQH-------HQQQQQPQLQQEVLQQVQ-QLQVQV 1537
            ....:..|..|......::..:.::.:. ..:|       |...::|:..:|.|:::. .|:..|
  Fly   132 DANLKTTPTYKFHPSFFRRDHRTIKFIEIYKEHPCLWNPAHSDYKEPKKCKEALKRMAIDLEATV 196

  Fly  1538 Q------------PQQHQQ----HQQVLQVQQPQQQPLMQPQSPHPSTVEMQASPTTPRKILCC- 1585
            .            .:.|.|    |::|:..:|       :|||...|..:           ||| 
  Fly   197 SVFLNEMALKLAIKKVHMQFNTVHKRVVSGKQ-------KPQSLAFSIYK-----------LCCF 243

  Fly  1586 ----PDCEDCTSGH------SHANEQFEELQTLQAP-PTVLTPPSTIVSVPSPQPMVY---SQHI 1636
                .|.|..|:..      |..|:...:|..:.|. |.:........|..|.:...|   :..|
  Fly   244 LNASNDEEGATNNEKIKLDFSKKNKLTTDLIEMYANFPQLYDSNHKEFSNMSSRKQAYESMAAEI 308

  Fly  1637 TMPSPEQSEPD---STTTLRQY----RKRGVIVGPQGPLHLATPVASPSPSSSPSSSTV------ 1688
            ::|:.:.:..|   :...|||:    .|..:..|.... .....|....|:.......|      
  Fly   309 SVPNVDINSDDIFRAIQNLRQWYYKNTKHAIYAGSTAE-KFYLEVCRFMPAKMYKQRLVCEFCHQ 372

  Fly  1689 ----DHIPPASPATPASPAPPPSPAVASTVQVSELRTSHHCLYCEERFTNEISLKKHHQLAHGAL 1749
                ||:..:.              :.....:.||  ...|..|:..|.....|..|.|..|...
  Fly   373 ITSSDHVLQSH--------------IFKAHNIGEL--PFKCTLCDRSFVGRCELANHIQRVHIGK 421

  Fly  1750 TTMPYVCTICKRGYRMRTALHRHMESHDVEGRPYECNICRVRFPRPSQLTLHKITVHLLSKPHTC 1814
            |   :.||.|:|.:.:.:.|..|:.:| ...:||.|..|...|...||:|||...:|...:...|
  Fly   422 T---HKCTHCERSFAVMSDLQLHIRTH-TGHKPYVCEHCGKAFRLRSQMTLHVTAIHTKIRAFKC 482

  Fly  1815 DECGKQFGTESALKTHIKFHGELGYQ-CDGCDRTFEYLKELRKHRRTHSEM-FYKCKFCPSSFMR 1877
            ..|.|.|..:..|..|||.|..:..: |..|.:.|.....|.:||:.|||: .:.||.|.|.|.:
  Fly   483 TMCPKDFVKKVDLSDHIKGHLNIRDKICSVCGKGFTSCHALIRHRQIHSEVKKFVCKLCDSRFSQ 547

  Fly  1878 FTNFRAHMK-THLPLGVFRNEDAASK 1902
            |.....||| ||   .:.||.....|
  Fly   548 FVGLNTHMKRTH---NILRNNSQKGK 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mldNP_001247289.1 zf-AD 186..255 CDD:214871
C2H2 Zn finger 1365..1388 CDD:275368 5/22 (23%)
C2H2 Zn finger 1396..1416 CDD:275368 3/27 (11%)
C2H2 Zn finger 1424..1445 CDD:275368 3/23 (13%)
C2H2 Zn finger 1725..1746 CDD:275368 6/20 (30%)
C2H2 Zn finger 1756..1776 CDD:275368 6/19 (32%)
C2H2 Zn finger 1785..1806 CDD:275368 8/20 (40%)
C2H2 Zn finger 1814..1834 CDD:275368 8/19 (42%)
zf-C2H2 1839..1861 CDD:278523 6/22 (27%)
C2H2 Zn finger 1841..1861 CDD:275368 6/19 (32%)
C2H2 Zn finger 1868..1888 CDD:275368 9/20 (45%)
CG1602NP_610291.2 GT1 157..244 CDD:304916 19/104 (18%)
MADF_DNA_bdg 273..356 CDD:287510 15/83 (18%)
C2H2 Zn finger 367..388 CDD:275368 2/34 (6%)
C2H2 Zn finger 397..418 CDD:275368 6/20 (30%)
COG5048 <423..554 CDD:227381 42/131 (32%)
C2H2 Zn finger 425..445 CDD:275368 6/19 (32%)
zf-H2C2_2 437..460 CDD:290200 7/23 (30%)
C2H2 Zn finger 453..470 CDD:275368 7/16 (44%)
C2H2 Zn finger 482..502 CDD:275368 8/19 (42%)
C2H2 Zn finger 510..530 CDD:275368 6/19 (32%)
C2H2 Zn finger 538..559 CDD:275368 9/20 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439977
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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