DRSC/TRiP Functional Genomics Resources

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Protein Alignment mld and Zfp282

DIOPT Version :9

Sequence 1:NP_001247289.1 Gene:mld / 2768685 FlyBaseID:FBgn0263490 Length:1965 Species:Drosophila melanogaster
Sequence 2:NP_001100062.1 Gene:Zfp282 / 297065 RGDID:1306278 Length:666 Species:Rattus norvegicus


Alignment Length:499 Identity:116/499 - (23%)
Similarity:173/499 - (34%) Gaps:141/499 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1446 MTLKTDPSGAVKVEDVQLQ--------ITSERRPRGRPYKPRLQLQQHQLQPQQKLQVQQHQQQ- 1501
            |:|.||  |.|...|..:|        :..:..|..|............|.|.|.:..|..::: 
  Rat   235 MSLDTD--GPVSKPDAPVQAEPREEPCVWEQHHPEEREIPGTADTGTEPLVPAQDMSSQVKREEA 297

  Fly  1502 -----QKALQQ--LPQAQHHQQQQQPQLQQEVLQQVQQLQVQVQPQQHQQHQQVLQVQQPQQQPL 1559
                 |::|::  :|.   ......|...|::|.:::           |:.||.:..||...:  
  Rat   298 MCVRSQRSLEERAIPT---ESITDSPISAQDLLSRIK-----------QEEQQCVWDQQDLAE-- 346

  Fly  1560 MQPQSPHPSTVEMQASPTTPRKILCCPDCEDCTSGHSHANEQFEELQTLQAPPTVLTPPSTIVSV 1624
                                |.|...|:.|...|.|.                 :|   |.|...
  Rat   347 --------------------RDIPTDPNSESLISAHD-----------------IL---SWIKQE 371

  Fly  1625 PSPQPMVYSQHITMPSPEQSEPDSTTTLRQYRKRGVIVGPQGPLHLA--TPVASPSPSSSPSSST 1687
            ..|.|.         .|..|         ...:.|:..||...|.|.  .|.||..|.:.|...:
  Rat   372 EQPYPW---------GPRDS---------MEGELGLDSGPSDSLLLVKNPPPASAQPQTQPHQQS 418

  Fly  1688 VDHIP-PASPATPAS--------PAPP--------PSP-------------------AVASTVQV 1716
            :..:. |.:|..|.|        ||.|        |.|                   ..||:...
  Rat   419 LPALAVPENPGGPGSRSLLEDGFPALPGERSTGGEPQPGGEGSAGGGGGGGSGGGGGTGASSSTS 483

  Fly  1717 SELRTSHHCLYCEERFTNEISLKKHHQLAHGALTTMPYVCTICKRGYRMRTALHRHMESHDVEGR 1781
            :.......|..|...     .|:: ..||||| .:.||.|..|.:.:.:|.:|..|..||..| |
  Rat   484 AGAGAGSGCGSCCPG-----GLRR-SLLAHGA-RSKPYSCLECGKTFGVRKSLIIHHRSHTKE-R 540

  Fly  1782 PYECNICRVRFPRPSQLTLHKITVHLLSKPHTCDECGKQFGTESALKTHIKFH-GELGYQCDGCD 1845
            ||||..|...|...|.|..|::| |...:|:.|.||.|.:..:..|:.|.:.| ||..:||..|.
  Rat   541 PYECAECEKSFNCHSGLIRHQMT-HRGERPYKCSECEKTYSRKEHLQNHQRLHTGERPFQCALCG 604

  Fly  1846 RTFEYLKELRKHRRTHS-EMFYKCKFCPSSFMRFTNFRAHMKTH 1888
            ::|...:.|.||:|.|: |..|.|..|..||....:.:.|::.|
  Rat   605 KSFIRKQNLLKHQRIHTGERPYTCGECGKSFRYKESLKDHLRVH 648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mldNP_001247289.1 zf-AD 186..255 CDD:214871
C2H2 Zn finger 1365..1388 CDD:275368
C2H2 Zn finger 1396..1416 CDD:275368
C2H2 Zn finger 1424..1445 CDD:275368
C2H2 Zn finger 1725..1746 CDD:275368 4/20 (20%)
C2H2 Zn finger 1756..1776 CDD:275368 5/19 (26%)
C2H2 Zn finger 1785..1806 CDD:275368 7/20 (35%)
C2H2 Zn finger 1814..1834 CDD:275368 6/19 (32%)
zf-C2H2 1839..1861 CDD:278523 8/21 (38%)
C2H2 Zn finger 1841..1861 CDD:275368 7/19 (37%)
C2H2 Zn finger 1868..1888 CDD:275368 5/19 (26%)
Zfp282NP_001100062.1 KRAB 198..260 CDD:214630 8/26 (31%)
KRAB 198..237 CDD:279668 1/1 (100%)
zf-C2H2 514..536 CDD:278523 6/21 (29%)
C2H2 Zn finger 516..536 CDD:275368 5/19 (26%)
zf-H2C2_2 528..553 CDD:290200 12/25 (48%)
COG5048 538..>593 CDD:227381 20/56 (36%)
C2H2 Zn finger 544..564 CDD:275368 7/20 (35%)
zf-H2C2_2 557..581 CDD:290200 9/24 (38%)
COG5048 568..>621 CDD:227381 18/52 (35%)
zf-C2H2 570..592 CDD:278523 6/21 (29%)
C2H2 Zn finger 572..592 CDD:275368 6/19 (32%)
zf-H2C2_2 584..609 CDD:290200 9/24 (38%)
C2H2 Zn finger 600..620 CDD:275368 7/19 (37%)
zf-H2C2_2 612..637 CDD:290200 11/24 (46%)
C2H2 Zn finger 628..648 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335925
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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