DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fancd2 and nup188

DIOPT Version :9

Sequence 1:NP_996246.1 Gene:Fancd2 / 2768674 FlyBaseID:FBgn0038827 Length:1478 Species:Drosophila melanogaster
Sequence 2:XP_001923018.1 Gene:nup188 / 559225 ZFINID:ZDB-GENE-030131-7184 Length:1732 Species:Danio rerio


Alignment Length:1580 Identity:292/1580 - (18%)
Similarity:511/1580 - (32%) Gaps:550/1580 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QFKKRSKKPLNTIDENATIKVPR------LAETTTNISVESSSGGSEENIPASQEHTQRFLSQHS 62
            |:.....:.|.:...|.|:...|      |:...|:.         ||:...||:|         
Zfish   354 QYLTNMLQALGSAGNNCTVSTARMCIYGLLSFVITSF---------EEDTLGSQQH--------- 400

  Fly    63 VILAA--TLGRTQSSSRNIATL--SRQPNNFFELVLVRAGVQLDQ---------GDSLILACDHV 114
            :|.||  .||     :.::|.|  ..:||       :..||.||.         |..|.|....:
Zfish   401 LINAACEVLG-----APSLAELFWESKPN-------MGLGVILDSAVGVFPYKTGPLLQLLTALL 453

  Fly   115 PIVSKLREIFTSASSYTDKM----ETFKTGLNAAMA--PGS---KLVQKLL-------------T 157
            ...|..::::|    :.|||    |.:|...|..::  .|:   :...|||             .
Zfish   454 SDKSTAKKVYT----FLDKMSFYTEAYKHRPNDVISREDGTLWRRQTHKLLYPLGVGQTNLRMPQ 514

  Fly   158 GCTVDAAGEEQIYQSQNSMFM--NFLMIDFMRDAC-VEVLLNKIEEVAKSDRVIMGKAAIPLPLL 219
            ||.......:|:...:....:  .:....:....| :|:||:   .|:.:|.::..:...|:..|
Zfish   515 GCFGQVCEGKQLSVGEQGFLVRWEYSYSSWTLFTCEIEMLLH---VVSTADVLVHCQRVKPILDL 576

  Fly   220 PLMLTQLRYLTASHKVEIYSRIEVIFNRATE--SAKLDII---ANAELILDASM---------HD 270
            ...:....:..:...:.:.|||.::..|.|.  :..:|:|   .|..:.|.|..         |.
Zfish   577 VHKIISTDWTVSDCLLPLTSRIYMLLQRLTSIINPPVDVITSCVNCLIALAARQPAKVWSSLHHT 641

  Fly   271 EFVELLNINYSSTEDLFHMTTV-----QTLGN----LSLSDRTQAKLRV-----RILDFATSGQC 321
            .|     :.::|| .|.:||..     ...||    |.|.::.:.:..|     |::.....||.
Zfish   642 GF-----LPFAST-PLTNMTQAISAEGMKAGNYGNLLVLIEQPRGEYSVTIAFLRLVTTLVKGQL 700

  Fly   322 SDAILPHLIRLLLNVLK--IDT-------DDSVRDLIGSL-----RGIFNWRHTNETEKISASED 372
            .......||..:|.|||  :.|       ...||:.||.|     ..|.|.....|:|..:.|..
Zfish   701 GSTQSRGLIPCVLLVLKEMLPTYHKWRYNTYGVRERIGCLILELVHAILNLNQECESEGSAPSLQ 765

  Fly   373 SKKSQLELFGFLELGLIRSKKFYQACQRSSASVPAAEF------TSFDMILLLLLIHVNEDNS-- 429
            |                       .|..|.|:..|.:.      ...|.|.::|....:...|  
Zfish   766 S-----------------------LCIYSLANTEAGQAVVNIMGVGVDTINMVLAAQPSSGGSEG 807

  Fly   430 ---LYIE----------NILRRRIKLEHITVSILEE-IRQHYRHILEQHITTLMNILHDFMREKN 480
               :.|:          |::  |:|.:..|.|.||: :.||..|                   .|
Zfish   808 PGQVLIQTVKLAFSVTNNVI--RLKPQSDTASPLEQALTQHGGH-------------------GN 851

  Fly   481 RIVSDFAKSSYSILFKIFNSIQKNILKKLLELTCDKSSPHLTTMALELLRELQRKSAKDVQNCA- 544
            .:::..||..|                       .|..|.|..:|::||:.|...:...|..|. 
Zfish   852 NLIAVLAKYIY-----------------------HKHDPALPRLAIQLLKRLATVAPMSVYACLG 893

  Fly   545 --------TLLIPMLDRISDLSLTQTRVAMDLLCHVAFPDPNLSPC---LQLQEQVD-------- 590
                    ..|..:..|..|:.:..|  .::.|.......|.|...   |:.::..|        
Zfish   894 SDAAAIRDAFLTRLQSRTEDMRIKVT--ILEFLTVAVETQPGLIELFLNLETKDASDGAKEFSLG 956

  Fly   591 ----MVVKKQLINSIDNIKKQGIIGCVQLID--AMARIANNGVDRDEFIASVENVDSLPDGRGKM 649
                :.|..:|::|    |:||...|..|:.  |:|.:.....||.:...||             
Zfish   957 EWSCLSVVLELLDS----KQQGKYWCPPLLQRAALAFLHALWQDRRDSALSV------------- 1004

  Fly   650 AANLIIRTEASIGNSTESLALFFEELAT-VFNQ---RNEGTSGCELDNQFIAWACDLVTFRFQAS 710
                 :||:..          |:|.|.| :|..   .:|.|..|.|::               .:
Zfish  1005 -----LRTKEK----------FWENLTTPLFGNLPPPSETTEPCVLES---------------CA 1039

  Fly   711 FVTENVPETLKGIKLEYQLNINELDDTDANTESDVLNIGINISKLVLSPKVKACDSIYVLAPLF- 774
            ||       :|.|.||....::.                      ||.|.:||....:.....: 
Zfish  1040 FV-------MKIIALEIYYVVSG----------------------VLEPSLKAALESFSSKRRYE 1075

  Fly   775 ---NYVRVLYKHRHQDSLESINALLGCAIVLPSF---------------FEDDNYVSVFENFEAE 821
               :|||.|.........|.:.:|....:::.::               .:||..          
Zfish  1076 FWSDYVRELVCVACDGEEEGLRSLSESQMLISAWRTLLILSTSHSEVMHLKDDTV---------- 1130

  Fly   822 QQKDILSIYFHTVNWMRVSISAFASQRDPPTRRRVLSRLGE-----LIRIEQRMKPLLARAPVDF 881
            :||..:.:...|...:.:|.|.|.            .|||.     |:.:.::.|.:|..||.  
Zfish  1131 RQKLFMDVLEGTKAALLMSQSVFC------------LRLGSMMVTLLLILLKQWKSVLVSAPA-- 1181

  Fly   882 VAPPYQFLTNVKLSNQNQKRPGPKPAAKLNATLPEPDLTGNQPSIADFTIKVGQCKTVKTKTDFE 946
            :.||...:....|..:.|.....|  |||        |:|                         
Zfish  1182 LLPPLSLMLESVLHAEQQLMDRTK--AKL--------LSG------------------------- 1211

  Fly   947 QMYGPRERYRPMEVEIIMLLVEQKFVLNHQLEEEQMGEFLGLLELRFLLEDVVQKLEAAVL---R 1008
                                    .:|..|::....||...|.:|...:.::||....|::   |
Zfish  1212 ------------------------LILALQIQGLNGGEISQLPQLLLCVCEMVQDEALALIDSTR 1252

  Fly  1009 H--------HDSYDADSFRPHLAK-PEDFICDLLPCLHEVNNHLITLGE------AIDNQLTEVS 1058
            |        .||.:.||  ||:.| .:|.:|.|  .|| ::..|....|      .:..:|..:.
Zfish  1253 HMIQRGDVQEDSMETDS--PHVQKDQQDSVCVL--ALH-LSKELCRADEDGEQWLQVVRKLPVLP 1312

  Fly  1059 HVYSNLDL---FKDQFCYIKSCF-----------------------GLCVRLFALYFAWSEWSDK 1097
            .|.|.|:|   .|....:.::..                       .:|:.|.::|...:..:::
Zfish  1313 SVLSALELSLRSKQNLYFTEAALHLLLTLARTPQGAAAVAGAGVIQSICLPLLSVYEGPANGANQ 1377

  Fly  1098 SQEQLLHKSLLKLQPKTQWKRLEKQSVPQLANL--TFQY-FLK--------YEKSVLNLSTAVH- 1150
            :       .:.|.|....|..:.:.|:..:.:|  |.:| |:.        :::.:|....||. 
Zfish  1378 A-------FVRKCQDAPSWPGVYRLSLSLMESLLKTLRYNFINEALDFVGVHQERILQCLNAVRT 1435

  Fly  1151 LHRLLC---------NLLKLGSLQSDASQPRFQQAEDLRI----LCGT----LLRRKWFHY---- 1194
            :..|.|         .||:|.:...:......|...|:::    ||.|    |..:|..|:    
Zfish  1436 VQSLACLDEADHTVGFLLQLSNFCKEWQFHLPQLLRDVQVNLCYLCQTCTYLLHSKKMLHHYLQA 1500

  Fly  1195 -SGT-LDKGGQCNIYLDELVKGFLKKSNAKSQTELLTELVKQCSILNTKDKALTSFPNFKKANFP 1257
             :|. |.:|......|....|..|:....:::::.|..:  |||:|....|.|.:..:|..    
Zfish  1501 KNGEGLPQGPHPQRALQPASKELLEGEREEAESKALQAV--QCSLLKILSKTLATLQHFTP---- 1559

  Fly  1258 LLFRGLCEVLIHS------------LS-GQVSVDSRGDKLKLWESAVDLLNGLLSIVQQVEQPRN 1309
                ..|::|:..            || ...:.||  |....:.:.:..:|..||::.::|:.:.
Zfish  1560 ----DCCQILLDQAMDLAEYRTLFVLSFSTPAFDS--DVAPSFGTLMATINVALSMLGEIEKKKE 1618

  Fly  1310 FGLFLKHSLLFLKLLLQHGM 1329
             .|........||.||...|
Zfish  1619 -PLISSEDTQALKSLLMFSM 1637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fancd2NP_996246.1 FANC 132..1422 CDD:302591 262/1433 (18%)
nup188XP_001923018.1 Nup188 29..942 CDD:287461 133/699 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
10.960

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