DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fancd2 and Nup188

DIOPT Version :9

Sequence 1:NP_996246.1 Gene:Fancd2 / 2768674 FlyBaseID:FBgn0038827 Length:1478 Species:Drosophila melanogaster
Sequence 2:XP_006233967.1 Gene:Nup188 / 366016 RGDID:1306022 Length:1754 Species:Rattus norvegicus


Alignment Length:1540 Identity:307/1540 - (19%)
Similarity:508/1540 - (32%) Gaps:542/1540 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 IEVIF--NRATESAKLDIIANAEL--------------ILDASMHDEFVELLNINYSSTEDLFHM 289
            :|:||  ....|.|..|::...::              ::|.:| |.||:  .|.|.|...|...
  Rat   215 LEIIFLYYAYFEMAPSDLLVLTKMFKEQGFGSRQTNRHLVDETM-DPFVD--RIGYFSALILVEG 276

  Fly   290 TTVQTLGNLSLSDRTQAKLRVRILDFATSGQ-CSDAILPHLIRLLLNVLKIDTDDSVRDLIGSLR 353
            ..:::|...:|.||.:      :..||..|. |.|     :.|::|.:..|.....|        
  Rat   277 MDIESLHKYALDDRRE------LHQFAQDGLICQD-----MDRIMLTLGDIPHHAPV-------- 322

  Fly   354 GIFNW---RHT---NETEKISASEDSKKSQLELFGFLELGLIRS-KKFYQACQRSSASVPAAEFT 411
             :..|   |||   .||..:.........||.:|.:| ..|:|| ......|..|:|.:......
  Rat   323 -LLAWALLRHTLNPEETSSVVRKIGGTAIQLNVFQYL-TRLLRSLASGGNDCTTSTACMCVYGLL 385

  Fly   412 SFDMILLLLLIHVNEDNSLYIENILRRRIKLEHITVS---------ILEEIRQHYRHILEQHITT 467
            ||.:..|.|....|:.:.:.....:.....|..:...         ||:.:...:.|:|    :.
  Rat   386 SFALTSLELHTLGNQQDVIDTACEVLADPSLPELFWGTEPTSGLGIILDSVCGMFPHLL----SP 446

  Fly   468 LMNILHDFMREKNRIVSDFAKSSYSILFKI--FNSIQK----NILK------------KLL---- 510
            |:.:|...:..|:.     ||..||.|.|:  :|.:.|    ::|.            |||    
  Rat   447 LLQLLRALVSGKST-----AKKVYSFLDKMSFYNELHKHKPHDVLSHEDGTLWRRQTPKLLYPLG 506

  Fly   511 -------------ELTCDK-----------SSPHLTTMALELLRELQRKSAKDV-QNCATLLIPM 550
                         ::..|.           ||..|.|..:|:|  |...|..|| |:|..:. |:
  Rat   507 GQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTLFTCEIEML--LHVVSTADVIQHCQRVK-PI 568

  Fly   551 LDRISDLSLTQTRVAMDLLCHVAFPDPNLSPCLQLQEQVDMVVKKQLINSIDNIKKQGIIGCVQL 615
            :|.:..:..|...:|..||       |..|....|.:::..|:...:     |:    |..||..
  Rat   569 IDLVHKVISTDLSIADCLL-------PITSRIYMLLQRLTTVISPPV-----NV----IASCVNC 617

  Fly   616 IDAMARIANNGVDRD-------EFIA-SVENVDSLPDGRGKMA---ANLIIRTEASIGNSTESLA 669
            :..:|......|..|       .|:| .|.|:..:....|..|   .:|::.:|...|....::|
  Rat   618 LTVLAARNPAKVWTDLRHTGFLPFVAHPVSNMTQMISAEGMNAGGYGSLLMNSEQPQGEYGVTVA 682

  Fly   670 LFFEELATVF------NQRNEGTSGC------ELDNQFIAWACDLVTFRFQASFVTE-------N 715
              |..|.|..      :.:::|...|      |:...:..|       |:.:..|.|       .
  Rat   683 --FLRLVTTLVKGQLGSTQSQGLVPCVMFVLKEVLPSYHKW-------RYSSHGVRELIGCLILE 738

  Fly   716 VPETLKGIKLEYQLN-----------INELDDTDA-NTESDVLNIGINISKLVLSPK-------- 760
            :...:..:..|.:|:           |..|..|:| .|...::.||::...:|::.:        
  Rat   739 LIHAILNLCQETELHSSHTPSLPSLCICSLAYTEAGQTVISIMGIGVDTIDMVMAAQPRSDGPEG 803

  Fly   761 ----------VKACDSI-----------YVLAPL-----------FNYVRVLYK---HRHQDSLE 790
                      ||...|:           .|::||           .|.:.||.|   |||..:|.
  Rat   804 QGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQALTQHGAHGNNLIAVLAKYIYHRHDPALP 868

  Fly   791 --SINALLGCAIVLPSFFEDDNYVSVFENFEAEQQKDILSIYFHTVNWMRVSISAFASQRDPPTR 853
              :|..|...|.|.|                       :|:|            |.........|
  Rat   869 RLAIQLLKRLATVAP-----------------------MSVY------------ACLGSDAAAIR 898

  Fly   854 RRVLSRLGELIRIEQRMKPLLARAPVDFVAPPYQFLTNVKLSNQNQKRPGPKPAAKLNATLPEPD 918
            ...|:||...|. :.|:|.::           .:||| |.:..|    ||   ..:|...|...|
  Rat   899 DAFLTRLQSKIE-DMRIKVMI-----------LEFLT-VAVETQ----PG---LIELFLNLEVKD 943

  Fly   919 LTGNQPSIADFTIKVGQC-KTVKTKTDFEQMYGPRERY--RPMEVEIIMLLVEQKFVLNHQLEEE 980
              |:..| .:|::.|..| ..|....|.:|    ::||  .|       ||........|.|.::
  Rat   944 --GSSGS-KEFSLGVWSCLHVVLELIDSQQ----QDRYWCPP-------LLHRAAIAFLHALWQD 994

  Fly   981 QMGEFLGLLEL--RFLLEDVVQKLEAAVLRHHDSYDADSFRPHLAKPEDFICDLLPCLHEVNNHL 1043
            :....:.:|..  || .|::...|...:     |..:::..|.:.:....|..:: || |:  :.
  Rat   995 RRDSAMLVLRTKPRF-WENLTSPLFGTL-----SPPSETSEPSILETCALIMKII-CL-EI--YY 1049

  Fly  1044 ITLGEAIDNQLTEVSHVYSNLDLFKDQFCYIKSCFGLCVRLFALYFAWSEWSDKSQEQLLHKSLL 1108
            :..| ::|..|.:....:|:...|.....|:||        .|:|.|  |....|...||...:|
  Rat  1050 VVKG-SLDQSLKDTLKKFSSEKRFAYWSGYVKS--------LAVYMA--ETEGNSCTSLLEYQML 1103

  Fly  1109 KLQPKTQWKRL--EKQSVPQLANLT--------FQYFLKYEKSVLNLSTAVHLHRLLCNLLKLGS 1163
                .:.|:.|  ...|...:.|||        |...|...|::|.::|:|       |.|:|||
  Rat  1104 ----VSAWRTLLIVATSHADIMNLTDVAVRRQLFLDVLDGTKALLLVATSV-------NCLRLGS 1157

  Fly  1164 LQSDASQPRFQQAEDLRILCGTL--LRRKWFHYSGTLDK--GGQCNIYLDELVKGFL-------K 1217
            :                 :|..|  |.|:|....|.:||  |.     |.|:::|.|       :
  Rat  1158 M-----------------MCTLLLILLRQWKRELGAVDKILGP-----LTEVLEGVLQADQQLME 1200

  Fly  1218 KSNAKSQTELLTELVKQCSILNTKDKALTSFPNFKKANFPLLFRGLCEVL-----------IHSL 1271
            |:.||..:..:|       :|..|:..::..|.:.:     |...:||.|           .|||
  Rat  1201 KTKAKVFSAFIT-------VLQMKELRVSEIPQYSQ-----LVLNVCETLQEEVIALFDQTRHSL 1253

  Fly  1272 S--------------------------GQV------------SVDSRGD---------------- 1282
            :                          |||            .||..||                
  Rat  1254 ASGSAAEDKDSMETDDCPRPRHKDQRDGQVCVLGLHLAKELCEVDEDGDSWLQVTRRLPILPTLL 1318

  Fly  1283 -----------KLKLWESAVDLL-------NG----------------LLSIVQ----------- 1302
                       .|...|:|:.||       .|                |||:.|           
  Rat  1319 TTLEVSLRMKQNLHFTEAALHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLSSNGTGQTPS 1383

  Fly  1303 ----QVEQPRNFGLF-LKHSLL--FLKLLLQHGMSALESIVREDPERLTRFLHELQKVTRFLHQL 1360
                .::.|...|:: |..||:  .||.|..:.::.....|....||..:.|:    ..|.:..|
  Rat  1384 TSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERTLQCLN----AVRTVQSL 1444

  Fly  1361 CCHSKSIKNTAII-----------SYIPSLRETIE-TLVFRVKALLAANNCHSAFHMGNMINRDL 1413
            .|..::......|           .::|.|...:: .|.:..:|      |.|..|...|:...|
  Rat  1445 ACLEEADHTVGFILQLSHFRKEWHFHLPQLMRDVQVNLGYLCQA------CTSLLHSRKMLQHYL 1503

  Fly  1414 ---HGD---SIITPR--------SSFAGEENSDDELPADDTSVDE 1444
               :||   |.:|||        :..|.......:.|..||...|
  Rat  1504 QNKNGDGLPSAVTPRVHRPSTTTTVLATPSGCSSKQPIADTEASE 1548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fancd2NP_996246.1 FANC 132..1422 CDD:302591 300/1508 (20%)
Nup188XP_006233967.1 Nup188 31..941 CDD:287461 167/841 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
10.960

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