DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pxd and Lar

DIOPT Version :9

Sequence 1:NP_001163633.1 Gene:Pxd / 2768671 FlyBaseID:FBgn0004577 Length:690 Species:Drosophila melanogaster
Sequence 2:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster


Alignment Length:797 Identity:156/797 - (19%)
Similarity:253/797 - (31%) Gaps:279/797 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 FPNYHGFSYLQGSAP--------YVIGNSLPTSPAPQNPFSSPASPPVSAYGYSFPTAGRVS--C 93
            |.:..|||..| ..|        ||..::: ...:|...::...|...|.|.|..||...|:  .
  Fly  1146 FVDSQGFSQTQ-IVPKREIILKHYVKTHTI-NELSPFTTYNVNVSAIPSDYSYRPPTKITVTTQM 1208

  Fly    94 AAPPAVCEKTAYRTLDGSCNHLEQPGLGVANSKYGRL------LTPKYADGI-SAPTRSVTGD-- 149
            |||..:.:...|..::|....:..|   .|:.:||.:      :.|:....: ..|.:.:|.|  
  Fly  1209 AAPQPMVKPDFYGVVNGEEILVILP---QASEEYGPISHYYLVVVPEDKSNLHKIPDQFLTDDLL 1270

  Fly   150 ------ELPSARLVSLVAFGEQDVPDPEFTLH-----------NMQWGQIMTHDMSMQAGGTQSK 197
                  |.|:|..:: ..|.::.:|   ||.|           |.:..:...:.:.::|.....:
  Fly  1271 PGRNKPERPNAPYIA-AKFPQRSIP---FTFHLGSGDDYHNFTNRKLEREKRYRIFVRAVVDTPQ 1331

  Fly   198 KHPTRCCTDDGRLIGLDTAHKTCFAIIVP----PHDPAYSQVGTECLNFVRTLTDRDSNCQYQGG 258
            || ....:.....:.||...       .|    ||.|                   |.|     .
  Fly  1332 KH-LYTSSPFSEFLSLDMRE-------APPGERPHRP-------------------DPN-----W 1364

  Fly   259 PAEQLTVVTSYLD--------LSLVYGNSIQQNSDIREFQGGRMIVEERNGAKWLPLSRNVTGDC 315
            |||....|....|        |.|:....|...:.|     ...:|:.|......|....||...
  Fly  1365 PAEPEVSVNRNKDEPEILWVVLPLMVSTFIVSTALI-----VLCVVKRRRQPCKTPDQAAVTRPL 1424

  Fly   316 DAVDASEVCYRSGDV---RVN-QNPGLAILQTILLREHNRIADALSALNPHYDDRTLFQEARKIN 376
            .|.|.......|..|   |:| |.||:.....|.:.|   .|:.:..|..: |::...||...|.
  Fly  1425 MAADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPISE---FANHIERLKSN-DNQKFSQEYESIE 1485

  Fly   377 IAQYQQISYYEWLPIFLGGENMLKNRLIYKAPSGSYINDFDPNIDPSVLNEHATAAFRYFHSQIE 441
            ..|     .:.|....| ..|..|||         |.|              .||   |.||:::
  Fly  1486 PGQ-----QFTWDNSNL-EHNKSKNR---------YAN--------------VTA---YDHSRVQ 1518

  Fly   442 GRLDLLSELRQVLGSLTLSDWFNRPGIIEVGDNFDSLTRGH----ATQ-PEELTDINFDR----- 496
                 |..:..|:|    ||:.|.        |:....|.|    ||| |.:.|.::|.|     
  Fly  1519 -----LPAVEGVVG----SDYINA--------NYCDGYRKHNAYVATQGPLQETFVDFWRMCWEL 1566

  Fly   497 ---------------QIK---HFLFRRNMPFGS--------------DLRSLDIQRNRDHGLASY 529
                           :||   ::..|....:|.              .:|:..:.|.      .:
  Fly  1567 KTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTFQLCRQ------GF 1625

  Fly   530 NDMREFCGLRRAHSWEGYG---------------DLISPP------------------------I 555
            ||.||...|:.. :|..:|               ..::||                        :
  Fly  1626 NDRREIKQLQFT-AWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSM 1689

  Fly   556 LEKLKSLYPSHEDVDLTVGASLEAHVAGALAGPTFLCILTEQFYRTRVGDRFFFENGDKL----T 616
            ||::|     ||.:     ..:..||.         |:..::.|..:..|::.|.:...|    .
  Fly  1690 LERMK-----HEKI-----IDIYGHVT---------CLRAQRNYMVQTEDQYIFIHDAILEAIIC 1735

  Fly   617 GFTPDQLEELRKASMARLLCDNGNHISSMQPEAFRTVSH----------SNPIIPCSNIPQ--VD 669
            |.|......|.......|:.:.|..||.|:.| |:.:|:          :|  :||:....  |.
  Fly  1736 GVTEVPARNLHTHLQKLLITEPGETISGMEVE-FKKLSNVKMDSSKFVTAN--LPCNKHKNRLVH 1797

  Fly   670 LTKWIDQKLYATVDPSH 686
            :..:...::|.|  |.|
  Fly  1798 ILPYESSRVYLT--PIH 1812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxdNP_001163633.1 An_peroxidase 105..643 CDD:281139 123/664 (19%)
peroxinectin_like 260..638 CDD:188655 91/474 (19%)
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470 13/53 (25%)
PTPc 1476..1731 CDD:214550 59/329 (18%)
PTPc 1503..1731 CDD:238006 52/296 (18%)
PTPc 1763..2022 CDD:214550 12/55 (22%)
PTPc 1791..2022 CDD:238006 5/24 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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