DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pxd and Ptgs1

DIOPT Version :9

Sequence 1:NP_001163633.1 Gene:Pxd / 2768671 FlyBaseID:FBgn0004577 Length:690 Species:Drosophila melanogaster
Sequence 2:NP_058739.4 Gene:Ptgs1 / 24693 RGDID:3439 Length:602 Species:Rattus norvegicus


Alignment Length:426 Identity:90/426 - (21%)
Similarity:157/426 - (36%) Gaps:139/426 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 LDLSLVYGNSIQQNSDIREFQGGRMIVEERNGAKWLPLSRNVTGDCDAVDASEVCYR-------S 327
            :||..:||:|:::...:|.|:.|::..:..:|..:.|          :|:.:.|..|       .
  Rat   230 VDLGHIYGDSLERQYHLRLFKDGKLKYQVLDGEVYPP----------SVEQASVLMRYPPGVPPE 284

  Fly   328 GDVRVNQN-----PGLAILQTILLREHNRIADALSALNPHYDDRTLFQEARKINIAQYQQISYYE 387
            ..:.|.|.     |||.:..||.||||||:.|.|...:|.:||..|||..|.|.|.:..:|...|
  Rat   285 KQMAVGQEVFGLLPGLMLFSTIWLREHNRVCDLLKEEHPTWDDEQLFQTTRLILIGETIKIIIEE 349

  Fly   388 WLPIFLGGENMLKNRLIYKAPSGSYINDFDPNIDPSVLNEHATAAFRYFHSQIEGRLDLLSELRQ 452
            ::....|....||               |||.:              .|.:|.:.|         
  Rat   350 YVQHLSGYFLQLK---------------FDPEL--------------LFRAQFQYR--------- 376

  Fly   453 VLGSLTLSDWFNRPGIIEVGDNFDSLTRGHATQPEELTDINFDRQIKHFLFRRNM--PFGSDL-- 513
                       ||     :...|:.|...|...|:.....:.:...:.|||..:|  .:|.:.  
  Rat   377 -----------NR-----IALEFNHLYHWHPLMPDSFQVGSQEYSYEQFLFNTSMLVDYGVEALV 425

  Fly   514 --------------RSLD----------IQRNRDHGLASYNDMREFCGLRRAHSWEGY-GDLISP 553
                          |:.|          |:.:|:..|.|:|:.|:..||:...|::.: |:   .
  Rat   426 DAFSRQRAGRIGGGRNFDYHVLHVAEDVIKESREMRLQSFNEYRKRFGLKPYTSFQEFTGE---K 487

  Fly   554 PILEKLKSLYPSHEDVDLTVGASLEAHVAGALAGPTFL--------------CILTEQFYR--TR 602
            .:..:|:.||...:.::...|..||.....:|.|.:.:              .|.:.::::  |.
  Rat   488 EMAAELEELYGDIDALEFYPGLMLEKCQPNSLFGESMIEMGAPFSLKGLLGNPICSPEYWKPSTF 552

  Fly   603 VGDRFFFENGDKLTGFTPDQLEELRKASMARLLCDN 638
            .||          .||     ..:..||:.:|:|.|
  Rat   553 GGD----------VGF-----NIVNTASLKKLVCLN 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxdNP_001163633.1 An_peroxidase 105..643 CDD:281139 90/426 (21%)
peroxinectin_like 260..638 CDD:188655 89/424 (21%)
Ptgs1NP_058739.4 EGF_CA 35..72 CDD:238011
prostaglandin_endoperoxide_synthase 92..578 CDD:188648 90/426 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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