DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pxd and skpo-3

DIOPT Version :9

Sequence 1:NP_001163633.1 Gene:Pxd / 2768671 FlyBaseID:FBgn0004577 Length:690 Species:Drosophila melanogaster
Sequence 2:NP_495511.1 Gene:skpo-3 / 174191 WormBaseID:WBGene00017968 Length:1000 Species:Caenorhabditis elegans


Alignment Length:607 Identity:203/607 - (33%)
Similarity:297/607 - (48%) Gaps:71/607 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 PTAGRVSCAAPPAVCEKTAYRTLDGSCNHLE-QPGLGVANSKYGRLLTPKYADGISAPTRSVTGD 149
            |......|.|  .:|....:|||||:||::: :|..|.:...|.|||...|.:.:|.|..|:..|
 Worm   447 PRLDEADCEA--NICYNAMFRTLDGTCNNMKGEPLRGASYRPYTRLLPTIYDNEVSEPVGSLFTD 509

  Fly   150 ELPSAR-LVSLVAFGEQDVPDPEFTLHNMQWGQIMTHDMSMQAGGTQSKKHPTRCCTDDGRLIGL 213
            ..||.| :...:...:..|..|::....||:||.::|||:.......||.:..:..|        
 Worm   510 ARPSPREITRRLTSSQASVESPDYNALIMQFGQFISHDMAKTTLVPSSKCNVCQNIT-------- 566

  Fly   214 DTAHKTCFAIIVPPHDPAYSQVGTECLNFVRTLTDRDSNCQYQGG--PAEQLTVVTSYLDLSLVY 276
                ..|.::.:...|...:....:|:.     ..|.|.....|.  |.:||...|.|:|.|.:|
 Worm   567 ----SRCMSVPITFDDSNANFRQAQCIR-----VSRSSPICGSGNLKPRQQLNENTGYIDASPIY 622

  Fly   277 GNSIQQNSDIREFQGGRMIVEERNGAKWLPLSRNV---TGDCDAVDASEVCYRSGDVRVNQNPGL 338
            |:|:..:...|:...|.:.:...||..:||..:|.   .|.|      .|.:.:||.|||...||
 Worm   623 GSSVHDSKKFRDGNSGFLKLPMFNGKAFLPFDQNKCRNRGQC------SVIFTAGDSRVNLFVGL 681

  Fly   339 AILQTILLREHNRIADALSALNPHYDDRTLFQEARKINIAQYQQISYYEWLPIFLGGENMLKNRL 403
            :...||...||||:..|...||||:|...|:|||||:..||.|.|.|.||||..||..       
 Worm   682 SAWHTIFTEEHNRLVTAFKRLNPHWDGERLYQEARKMIGAQVQAIVYREWLPKVLGAS------- 739

  Fly   404 IYKAPSGSYINDFDPNIDPSVLNEHATAAFRYFHSQIE---GRLDLLSELRQV-LGSLTLSDWFN 464
             :....|.| ..:|.::|.:|.||..:||||:.|..|:   .|||  :..|.: .|:|.......
 Worm   740 -FATVVGDY-RGYDSDVDSTVANEFTSAAFRFGHGMIQEFYQRLD--NSFRNISFGALPFQKGTL 800

  Fly   465 RPGIIEVGDNFDSLTRGHATQ----PEELTDINFDRQIKHFLFRRNMPFGS-DLRSLDIQRNRDH 524
            ...::......|.|.||..:|    |:.:|.          ....|| ||| ||.:::|||.|||
 Worm   801 HSDVLVNEGGVDPLIRGMFSQNVKRPQRVTT----------TVTENM-FGSTDLSTINIQRGRDH 854

  Fly   525 GLASYNDMREFCGLRRAHSWEGYG-DLISPPILEKLKSLYPSHEDVDLTVGASLEAHVAGALAGP 588
            |..:|...||.||:..|.::|... ::::.....||:.:|.|.:.:||.|||.||..:...|.||
 Worm   855 GHPAYVKYRELCGMGTAFNFEHLSREILNTGTRNKLQEIYGSVDKIDLWVGALLEDPIIRGLVGP 919

  Fly   589 TFLCILTEQFYRTRVGDRFFFENGDKLTGFTPDQLEELRKASMARLLCDNGNHISSMQPEAFRTV 653
            |..||:..||.|||.||||::||...   |:..||.|:||:|::|::|||.|.||::..|||| |
 Worm   920 TVACIIGPQFKRTRDGDRFYYENPGV---FSRRQLVEIRKSSLSRIICDNTNTISTIPREAFR-V 980

  Fly   654 SHSNPIIPCSNIPQVDLTKWID 675
            .|   ::|||.||.:||.:|.|
 Worm   981 GH---MVPCSQIPSMDLNQWRD 999

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxdNP_001163633.1 An_peroxidase 105..643 CDD:281139 182/554 (33%)
peroxinectin_like 260..638 CDD:188655 139/390 (36%)
skpo-3NP_495511.1 ShKT 41..75 CDD:214586
An_peroxidase 464..978 CDD:376988 185/561 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 297 1.000 Inparanoid score I1651
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 1 1.000 - - FOG0000202
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.970

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