DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer1 and Neurod2

DIOPT Version :9

Sequence 1:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_062199.2 Gene:Neurod2 / 54276 RGDID:3166 Length:382 Species:Rattus norvegicus


Alignment Length:300 Identity:74/300 - (24%)
Similarity:111/300 - (37%) Gaps:79/300 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EGSQATNASTSSSDYFFGDEHSSESDDEDDAYSSGFNSDQENTEKTFCPFSRRSHKPRRLKCASQ 83
            |..:.|.|.........|:|...|.::|      |.:..:....|...|..|:..|.|    ..:
  Rat    64 EVPEPTLAEVKEEGELGGEEEEEEEEEE------GLDEAEGERPKKRGPKKRKMTKAR----LER 118

  Fly    84 MAQQRQAANLRERRRMQSINEAFEGLRTHIPTLPYEKRLSKVDTLKLAISYITFLSEMVKKDKNG 148
            ...:||.||.|||.||..:|.|.:.||..:|.....::|||::||:||.:||..|||::   ::|
  Rat   119 SKLRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL---RSG 180

  Fly   149 NEP-----------GLS----------LQ---RNYQKE-----------------------PPKK 166
            ..|           |||          ||   ||:..|                       |..:
  Rat   181 KRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSR 245

  Fly   167 I------ILKDRTGGVAHSLSWYRKGDRYPGSKLYART--------WTPEDPRGPHSQPLPLYNN 217
            :      ......||.||:|..:.....|  ..|||..        :...:..||.|.||.|..|
  Rat   246 LAGAQCQAAGGLGGGAAHALRTHGYCAAY--ETLYAAAGGGGASPDYNSSEYEGPLSPPLCLNGN 308

  Fly   218 SNSNQNQN-SNQSSDDFS--GSGADMSDPGAAASIFSSGS 254
            .:..|:.: .::.|..:|  .|....|.|.....:|.|.:
  Rat   309 FSLKQDSSPDHEKSYHYSMHYSALPGSRPAGHGLVFGSSA 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer1NP_001262334.1 HLH 92..144 CDD:197674 23/51 (45%)
Neurod2NP_062199.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..129 17/74 (23%)
bHLH_TS_NeuroD2 88..180 CDD:381563 33/104 (32%)
Nuclear localization signal. /evidence=ECO:0000255 107..113 1/5 (20%)
Neuro_bHLH 180..310 CDD:403655 27/131 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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