DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fer1 and HLH3B

DIOPT Version :9

Sequence 1:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_525055.1 Gene:HLH3B / 31249 FlyBaseID:FBgn0011276 Length:376 Species:Drosophila melanogaster


Alignment Length:285 Identity:67/285 - (23%)
Similarity:99/285 - (34%) Gaps:97/285 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MARHFFEGSQATNASTSSSDYFFGDE-------HSSESDDEDDAYSSGFNSDQENTEKTFCPFSR 70
            :.||.....|....|.|..|   ||.       :.:|.|:||.......|.:|.:..::... |.
  Fly    57 LLRHATPHLQPKTESISDGD---GDAELSDFSLNDTEEDEEDLRDYIVLNGNQADANRSLSS-SP 117

  Fly    71 RSHKPRRLKCASQMA--------------------------------QQRQAANLRERRRMQSIN 103
            |||....|..|...:                                .::...|.|||.|.|:::
  Fly   118 RSHSRNGLLTAPASSGSSVGGSGGGGGNGSGGNASSGGGSGVGATGGVRKVFTNTRERWRQQNVS 182

  Fly   104 EAFEGLRTHIPTLPYEKRLSKVDTLKLAISYITFLSEMV--------------KKDKNGNE---- 150
            .||..||..:||.|.:|:|||.:.|:.||.||..|:.::              :.:.|.|:    
  Fly   183 GAFAELRKLVPTHPPDKKLSKNEILRSAIKYIKLLTGILEWQQRQAPSHPIRAQMEPNNNDNRMA 247

  Fly   151 -----PGLSLQRNYQKEPPKKIILKDRTGGVAHSLSWYRKGDRY---------------PG---- 191
                 .|.:|:.  ...||.:.|..:||.|..|     |.|..:               ||    
  Fly   248 NGHAADGENLEN--PDVPPVRHIKCERTDGQMH-----RNGIGHGHANGNAGNDLLMIAPGAVVK 305

  Fly   192 SKLYARTWTP--EDPRGPHSQPLPL 214
            |:|...:..|  ....||   ||||
  Fly   306 SELLLESTLPLGHPLNGP---PLPL 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer1NP_001262334.1 HLH 92..144 CDD:197674 23/65 (35%)
HLH3BNP_525055.1 HLH 171..222 CDD:197674 23/50 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.