DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fer1 and Mesp2

DIOPT Version :10

Sequence 1:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_001099743.1 Gene:Mesp2 / 293046 RGDID:1305959 Length:368 Species:Rattus norvegicus


Alignment Length:242 Identity:60/242 - (24%)
Similarity:91/242 - (37%) Gaps:80/242 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 ARHFFEGSQATNASTSSSDYFFGDEHSSESDDEDDAYSSGFNSDQENTEKTFCPFSRRSHKPRRL 78
            |||....|.|:::.:|.|...:.....|:        |:|......||:..       .:.|||.
  Rat    25 ARHSDSTSPASSSDSSGSCPCYATRPPSQ--------STGPARSARNTQVA-------PNAPRRA 74

  Fly    79 KCASQMAQQRQAANLRERRRMQSINEAFEGLRTHIP--TLPYEKRLSKVDTLKLAISYITFLSEM 141
            :.| ....|||:|:.||:.||:::..|.:.||..:|  ..|..:.|:|::||:|||.||..||.:
  Rat    75 RPA-PAGGQRQSASEREKLRMRTLARALQELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSAL 138

  Fly   142 VKKDKNGNEPGLSLQRNYQKEPPKKIILKDRTGGVAHSLSWYRKGDRYPGSKLYARTWTPEDPRG 206
            :...::      ||:|.           :.|:...|.|                           
  Rat   139 LGLSED------SLRRR-----------RRRSADAAFS--------------------------- 159

  Fly   207 PHSQPLPLYNNSNSNQNQNSNQSSDDFSGSGADMSDPGAAASIFSSG 253
             |..|                |..||.|.|.|.|..|...:.| |||
  Rat   160 -HRCP----------------QCPDDSSPSQAQMLGPSLGSDI-SSG 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer1NP_001262334.1 bHLH_TS_PTF1A 87..142 CDD:381423 24/56 (43%)
Mesp2NP_001099743.1 bHLH_TS_Mesp 82..146 CDD:381508 24/69 (35%)

Return to query results.
Submit another query.