DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fer1 and hlh-6

DIOPT Version :9

Sequence 1:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_496070.1 Gene:hlh-6 / 188539 WormBaseID:WBGene00001952 Length:268 Species:Caenorhabditis elegans


Alignment Length:125 Identity:37/125 - (29%)
Similarity:63/125 - (50%) Gaps:12/125 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 DAYSSGFNSDQENTEKTFCPFSRRSHKPRRLKCASQMAQQRQAA---NLRERRRMQSINEAFEGL 109
            |..|:.|       :|...||:..:..|..::...|......:.   |.|||.|::::|:.:|.|
 Worm   139 DTSSNAF-------KKYVNPFAPEATVPLPVELEDQYGPYSSSVWKRNERERCRVRNVNDGYERL 196

  Fly   110 RTHIPTLPYEKRLSKVDTLKLAISYITFLSEMVKKDKNGNEPGLSLQRNYQKEPPKKIIL 169
            |.|:|....|||:||||||:|||.||..|..:::.:.  ::........:|:|....|::
 Worm   197 RKHLPVHFDEKRISKVDTLRLAIRYIKHLDNLLRSEL--HQYNCKCFNGFQEESEGNILI 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer1NP_001262334.1 HLH 92..144 CDD:197674 26/51 (51%)
hlh-6NP_496070.1 HLH 179..231 CDD:197674 26/51 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.