DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fer1 and hlh-16

DIOPT Version :10

Sequence 1:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_492372.2 Gene:hlh-16 / 183973 WormBaseID:WBGene00001960 Length:146 Species:Caenorhabditis elegans


Alignment Length:122 Identity:37/122 - (30%)
Similarity:58/122 - (47%) Gaps:20/122 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 EKTFCPFSRRSHKP----RRLKCASQMAQQ--RQAANLRERRRMQSINEAFEGLRTHIPTLPY-- 118
            |:.|.|:.||....    ::::..::..|.  |.:.|.||||||..:|:.||.||   ..|||  
 Worm    10 EEEFEPYVRRKRSEAGGRKKMQGLNEQEQNLLRNSINSRERRRMHELNDEFETLR---ECLPYPN 71

  Fly   119 ---EKRLSKVDTLKLAISYITFLS------EMVKKDKNGNEPGLSLQRNYQKEPPKK 166
               .:|:||.:||.||.::|..|:      :|.....|.....|.:|....::|..|
 Worm    72 EANSRRMSKANTLLLASNWIKQLANANHKLQMELNMANAKIDSLMVQLKKVEKPSSK 128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer1NP_001262334.1 bHLH_TS_PTF1A 87..142 CDD:381423 25/67 (37%)
hlh-16NP_492372.2 bHLH_TS 42..96 CDD:381396 25/56 (45%)

Return to query results.
Submit another query.