DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer1 and atoh1c

DIOPT Version :9

Sequence 1:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster
Sequence 2:XP_003199618.1 Gene:atoh1c / 100498672 ZFINID:ZDB-GENE-090805-1 Length:204 Species:Danio rerio


Alignment Length:132 Identity:42/132 - (31%)
Similarity:72/132 - (54%) Gaps:34/132 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 SDQENTEKTFCPFSRRSHKPRRLK-------CA----------------SQMAQQRQ----AANL 93
            :|:.::|:  ||.:....:..:|:       ||                |.:|:.|:    |||.
Zfish    16 TDRSHSEQ--CPKAPMGWREEQLQDRASCDPCALVQLRLTGLSYSSEEQSSIARARRRRRLAANA 78

  Fly    94 RERRRMQSINEAFEGLRTHIPTLPYEKRLSKVDTLKLAISYITFLSEMVKKDKNGNE----PGLS 154
            ||||||..:|.||:.||:.||.:..:::|||.:||::|..||:.|||:: :||:.:.    |.|:
Zfish    79 RERRRMLGLNVAFDRLRSVIPNVESDRKLSKSETLQMAQIYISTLSELL-EDKDCDPETPYPTLT 142

  Fly   155 LQ 156
            :|
Zfish   143 MQ 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer1NP_001262334.1 HLH 92..144 CDD:197674 25/51 (49%)
atoh1cXP_003199618.1 HLH 87..129 CDD:197674 18/42 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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