DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fer1 and tcf23

DIOPT Version :10

Sequence 1:NP_001262334.1 Gene:Fer1 / 2768661 FlyBaseID:FBgn0037475 Length:256 Species:Drosophila melanogaster
Sequence 2:XP_001342593.5 Gene:tcf23 / 100002924 ZFINID:ZDB-GENE-090806-5 Length:172 Species:Danio rerio


Alignment Length:177 Identity:47/177 - (26%)
Similarity:80/177 - (45%) Gaps:30/177 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 DEDDAYSSGFNSDQENTEKTFCPFSRRSHKPRRLK-------------CASQMAQQRQAANLRER 96
            |||.|:..|.:..:....:|:.....:....|..|             |.||.:.:..|   |||
Zfish     7 DEDMAWQRGEDGGKSLRTQTWNQTCVKLATQREAKKWVKSGPTASSRACKSQTSPENAA---RER 68

  Fly    97 RRMQSINEAFEGLRTHIPTLPYEKRLSKVDTLKLAISYITFLSEMVKKDKNGNEPGLS-LQRNYQ 160
            .|::::.:||..|:..:|::|.:.:|||:|.|.||.:||..|:|.:  |:.|.....| |||...
Zfish    69 SRVRNLRQAFHSLQAALPSVPPDTKLSKLDVLVLATNYIAHLTETL--DQGGMLGDQSVLQRVEY 131

  Fly   161 KEPPKKIILKD--RTGGVAHSLSWYRKGDRYPGSKLYARTWTPEDPR 205
            ..|.||..::.  ..|.:         |:|..|:::...|.:..:.|
Zfish   132 LHPVKKWPMRSLLYCGNI---------GERLTGAQVSQETASKAESR 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer1NP_001262334.1 bHLH_TS_PTF1A 87..142 CDD:381423 21/54 (39%)
tcf23XP_001342593.5 None

Return to query results.
Submit another query.