DRSC/TRiP Functional Genomics Resources

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Protein Alignment RABGEF1 and Rabex-5

DIOPT Version :10

Sequence 1:NP_001354670.1 Gene:RABGEF1 / 27342 HGNCID:17676 Length:530 Species:Homo sapiens
Sequence 2:NP_612093.1 Gene:Rabex-5 / 38144 FlyBaseID:FBgn0262937 Length:696 Species:Drosophila melanogaster


Alignment Length:398 Identity:75/398 - (18%)
Similarity:148/398 - (37%) Gaps:97/398 - (24%)


- Green bases have known domain annotations that are detailed below.


Human   164 DVDGLDRTAGAIR--------------GRAARVIHVVTSEMDNYEP------GVYTEKVL----- 203
            |.:||.|....||              .:.|..:|...|.: ::.|      |...::|:     
  Fly    21 DYNGLKRVLKEIRSYKHSKLTRAASRVSQQAEALHRSFSGL-SFHPRHSERAGDIEDQVIKVDTV 84

Human   204 --EATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDEN-------------EFIDASRLVYDGIR 253
              |.::.|..|   :|.::.|...| ......:.:|||             |.|:.:.|: |...
  Fly    85 QEEGSRKLYET---KFLKKSEEGGE-FEESFFKKLDENLNKVNKFYRDKVKEVIEEAALL-DKQM 144

Human   254 DIRKAVLMIRTPEELDDSDFETEDFDVRSRTSVQTEDDQLIAGQSARAIM------AQLPQEQKA 312
            |...|:.:.....::|:.:.|....|   :..|.|.|:.:....:|...|      ..:|:|:.:
  Fly   145 DALIALRVKMQKPDVDNLNLEKHPSD---KVVVDTSDNTMRTQGTANTDMVHGIERTNIPEEEAS 206

Human   313 KIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAAK 377
            .|...:........  |.|.:...|. .|:..:.:::.|..:..:..|..||...::::.||  |
  Fly   207 HIMADIVPVSHTNG--DEEEASIGDK-QDLREILERVKMNDVLESPITTLKGVFGDSNEPIS--K 266

Human   378 KIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNIC--SKVKAEVQNLGGELV-- 438
            |..:.|....:|            ...:....|:|:..|.. :|:.  ||:..:.:.:.....  
  Fly   267 KGLKKGEEQLRL------------VFSEFYQKLRRLKEYSF-MNLLAFSKIMKKYEKIASRNASR 318

Human   439 --VSGVDSAMSLIQAAKNLMNAVVQTVKASYVAS-TKYQKSQGMASLNLPAVSWKMKAPEKKPLV 500
              :..||:  ||| .:.:.:|.:::.|:.::|.. :...:.:||..|              :|.|
  Fly   319 NYMKIVDN--SLI-GSSDEVNRLLERVEVTFVKHFSSGNRREGMKCL--------------RPKV 366

Human   501 KREKQDET 508
            |||:...|
  Fly   367 KRERHRVT 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RABGEF1NP_001354670.1 zf-A20 17..40 CDD:460313
DUF5601 158..259 CDD:465668 26/134 (19%)
VPS9 309..409 CDD:460489 16/99 (16%)
Rabex-5NP_612093.1 zf-A20 17..40 CDD:460313 6/18 (33%)
DUF5601 163..220 CDD:465668 10/59 (17%)
VPS9 274..373 CDD:460489 23/128 (18%)
Blue background indicates that the domain is not in the aligned region.

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