DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cntn6 and Nrg

DIOPT Version :9

Sequence 1:NP_037357.1 Gene:Cntn6 / 27256 RGDID:62008 Length:1028 Species:Rattus norvegicus
Sequence 2:NP_001245581.1 Gene:Nrg / 31792 FlyBaseID:FBgn0264975 Length:1309 Species:Drosophila melanogaster


Alignment Length:1077 Identity:308/1077 - (28%)
Similarity:484/1077 - (44%) Gaps:123/1077 - (11%)


- Green bases have known domain annotations that are detailed below.


  Rat     4 LWK--------LVILLPLINSCAG--ESRFTRPIFIQE---PQDVIFPLDLSRSE----IILSCT 51
            :|:        ||.||     |||  ||:..||..|.:   |.:::|.:.....|    .|:.|.
  Fly     1 MWRQSTILAALLVALL-----CAGSAESKGNRPPRITKQPAPGELLFKVAQQNKESDNPFIIECE 60

  Rat    52 ASGYPSPHYRWKQNGTDIDFSMTYHYRL----DGGSLAISSPRTDQDIGIYQCLATNPVGTILSR 112
            |.|.|.|.|.|.:||...|: ..|..|:    ..|:|.|:.|: |:|.|.|||.|:|..||..|.
  Fly    61 ADGQPEPEYSWIKNGKKFDW-QAYDNRMLRQPGRGTLVITIPK-DEDRGHYQCFASNEFGTATSN 123

  Rat   113 KAKLQFAYIEDFETKSRSTVSVREGQGVVLLCGPPPHFGELSYDWTFNDNPLYVQE--------- 168
            ...::.|.:..|:.::..|:...||:..:|.|..|..|...:.:|       .:||         
  Fly   124 SVYVRKAELNAFKDEAAKTLEAVEGEPFMLKCAAPDGFPSPTVNW-------MIQESIDGSIKSI 181

  Rat   169 DKRRFVSQNTGNLYIAKVEPSDVGN---YTCFVTNKEAHRSVQGPPTPLVQRTDGVMGEYEPKIE 230
            :..|......|||:.:.|...|..:   |.|..|:........|....|..:..||.........
  Fly   182 NNSRMTLDPEGNLWFSNVTREDASSDFYYACSATSVFRSEYKIGNKVLLDVKQMGVSASQNKHPP 246

  Rat   231 VR-FPETIQ--AAKDSSVKLECFALGNPVPDISWRRLDGSPM--PGKVKYSNSQATLEIPKFQQE 290
            || :....|  |.:...::|.|...|.|:|...|.: ||..:  ..::...:...:|.|.:...:
  Fly   247 VRQYVSRRQSLALRGKRMELFCIYGGTPLPQTVWSK-DGQRIQWSDRITQGHYGKSLVIRQTNFD 310

  Rat   291 DEGFYECVAGNLRGRNLAKGQLI--------FYAPPEWEQKIQNTYLSIYDSLFWECKASGNPNP 347
            |.|.|.|...|..| |.....:|        |...||.....::      :.:.:||:|:|.|.|
  Fly   311 DAGTYTCDVSNGVG-NAQSFSIILNVNSVPYFTKEPEIATAAED------EEVVFECRAAGVPEP 368

  Rat   348 SYTWLKNGERLN----TEERIQTENGTLIITMLNVSDSGIYQCAAENKYQTIYANAELRVLASAP 408
            ..:|:.||:.:.    ...|..|:|...||.::. .|:|.|.|.|.|....:|.:..|.|.|..|
  Fly   369 KISWIHNGKPIEQSTPNPRRTVTDNTIRIINLVK-GDTGNYGCNATNSLGYVYKDVYLNVQAEPP 432

  Rat   409 DFSKNPIKKISVVQVGGDISIECKPNAFPKASISWKRGTENLKQSKRVFFLEDGSLKICNVTRSD 473
            ..|:.| ..:|.|. |.:::|:|:.|..||..:.|.|.: |.....|.....:|.|:|.:||.||
  Fly   433 TISEAP-AAVSTVD-GRNVTIKCRVNGSPKPLVKWLRAS-NWLTGGRYNVQANGDLEIQDVTFSD 494

  Rat   474 AGSYTCVATNQFGNGKSSGSLIVKERTVITVPPSKMDVTVGESIVLPCQVSHDPTMEVLFVWYFN 538
            ||.|||.|.|:||..::.|||:|||.|.||..|...:|..|:|....|..:||.|:|:...|:.:
  Fly   495 AGKYTCYAQNKFGEIQADGSLVVKEHTRITQEPQNYEVAAGQSATFRCNEAHDDTLEIEIDWWKD 559

  Rat   539 GDVIDLKKGVAHFERIGGESVGDLMIRNIQLGHSGKYLCTVQTTLERLSAVADIIVRGPPGPPED 603
            |..||. :....|.:....|:  .:.:.::| .||:|.|..:|.|:..:|.|::||:..|..|  
  Fly   560 GQSIDF-EAQPRFVKTNDNSL--TIAKTMEL-DSGEYTCVARTRLDEATARANLIVQDVPNAP-- 618

  Rat   604 VKVEHIS--STTSQLSWRPGPDNNSPIQIFTIQTRTPFS-VGWQAV-ATVPEILNGQTYNATVIG 664
             |:..|:  :..:::.|....||.|||..:|||..|.|: ..|.|. ..||     .|.::.|:.
  Fly   619 -KLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP-----NTDSSFVVQ 677

  Rat   665 LSPWVEYEFRVVAGNNIGIGEPSKPSELLRTKASIPNVAPVNINGGGGSRSELVITWEPIPEELQ 729
            :|||..|.|||:|.|.||...||..|:...|:..:|...|.|:.|.|...:.|||:|.|:||...
  Fly   678 MSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEH 742

  Rat   730 NGEGFGYIIMF-RPVGSTTWMKEKVALVESSKFIYRNESIM-----PLSPFEVKVGVYNNEGEGS 788
            |...|.|.:.: |.:.:..|....:       |.:|..:|:     ....:.:||...|:.||.:
  Fly   743 NAPNFHYYVSWKRDIPAAAWENNNI-------FDWRQNNIVIADQPTFVKYLIKVVAINDRGESN 800

  Rat   789 LSTVSIV-YSGEDEPRLAPRG-TSVQSFSASDMEVSWNAIAWNRNTGRVLGYEVLYWTDNSKESM 851
            ::...:| |||||.|..||.. |..|..|::...::|..::.....|...||::..||:|..|..
  Fly   801 VAAEEVVGYSGEDRPLDAPTNFTMRQITSSTSGYMAWTPVSEESVRGHFKGYKIQTWTENEGEEG 865

  Rat   852 IGKIRVSGNVTTKNITGLRANTIYFASVRAYNTAGTGPSSPPVNVTTKKSPPSQPPANIAWKLSN 916
            :.:|.|.|:.....:|..:.::..:|.:.|||....||.|..::..|.:..||......|:.|.:
  Fly   866 LREIHVKGDTHNALVTQFKPDSKNYARILAYNGRFNGPPSAVIDFDTPEGVPSPVQGLDAYPLGS 930

  Rat   917 SKLCLNWEHVKTMENESEVLGYKILYR--------QNRQSKTHVLETNNTSAEL--LVPFEEDYL 971
            |...|:|:  |.:....::.||||.|.        :.|:...|:.:...|..::  |.| ...|.
  Fly   931 SAFMLHWK--KPLYPNGKLTGYKIYYEEVKESYVGERREYDPHITDPRVTRMKMAGLKP-NSKYR 992

  Rat   972 IEIRTVSDGGDGSSSEEIRIPKMSSLSSVGVQILKPS 1008
            |.|...:..|:||   |..|.|.:...:|.|....||
  Fly   993 ISITATTKMGEGS---EHYIEKTTLKDAVNVAPATPS 1026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cntn6NP_037357.1 Ig strand D 76..80 CDD:409353 1/7 (14%)
Ig strand E 82..88 CDD:409353 3/5 (60%)
Ig strand F 95..104 CDD:409353 5/8 (63%)
Ig strand G 107..120 CDD:409353 3/12 (25%)
Ig 129..214 CDD:416386 20/96 (21%)
Ig strand A 130..135 CDD:409353 1/4 (25%)
Ig strand B 139..145 CDD:409353 1/5 (20%)
Ig strand C 153..159 CDD:409353 1/5 (20%)
Ig strand C' 164..166 CDD:409353 0/1 (0%)
Ig strand D 171..176 CDD:409353 1/4 (25%)
Ig strand E 179..183 CDD:409353 3/3 (100%)
Ig strand F 193..201 CDD:409353 3/10 (30%)
Ig strand G 203..214 CDD:409353 1/10 (10%)
Ig 227..315 CDD:416386 22/100 (22%)
Ig strand A 227..232 CDD:409353 0/4 (0%)
Ig strand A' 235..240 CDD:409353 1/6 (17%)
Ig strand B 243..252 CDD:409353 2/8 (25%)
Ig strand C 258..262 CDD:409353 0/3 (0%)
Ig strand C' 265..267 CDD:409353 1/1 (100%)
Ig strand D 276..279 CDD:409353 0/2 (0%)
Ig strand E 280..285 CDD:409353 1/4 (25%)
Ig strand F 293..301 CDD:409353 3/7 (43%)
Ig strand G 304..315 CDD:409353 3/18 (17%)
Ig 319..403 CDD:416386 23/87 (26%)
Ig strand A 319..322 CDD:409353 1/2 (50%)
Ig strand A' 326..330 CDD:409353 0/3 (0%)
Ig strand B 334..342 CDD:409353 2/7 (29%)
Ig strand C 348..353 CDD:409353 1/4 (25%)
Ig strand C' 355..358 CDD:409353 1/2 (50%)
Ig strand D 363..367 CDD:409353 1/3 (33%)
Ig strand E 369..374 CDD:409353 1/4 (25%)
Ig strand F 383..390 CDD:409353 3/6 (50%)
Ig strand G 394..403 CDD:409353 2/8 (25%)
Ig5_Contactin 408..496 CDD:409358 34/87 (39%)
Ig strand B 427..431 CDD:409358 1/3 (33%)
Ig strand C 440..444 CDD:409358 0/3 (0%)
Ig strand E 462..466 CDD:409358 2/3 (67%)
Ig strand F 476..481 CDD:409358 3/4 (75%)
Ig strand G 489..492 CDD:409358 0/2 (0%)
Ig 500..598 CDD:416386 29/97 (30%)
Ig strand A' 507..512 CDD:409353 0/4 (0%)
Ig strand B 515..523 CDD:409353 2/7 (29%)
Ig strand C 532..536 CDD:409353 0/3 (0%)
Ig strand E 560..564 CDD:409353 0/3 (0%)
Ig strand F 573..580 CDD:409353 3/6 (50%)
Ig strand G 587..591 CDD:409353 1/3 (33%)
FN3 598..691 CDD:238020 34/96 (35%)
FN3 703..796 CDD:238020 25/99 (25%)
FN3 805..898 CDD:238020 24/93 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 887..908 6/20 (30%)
FN3 903..983 CDD:214495 22/89 (25%)
Ig 26..120 CDD:416386 33/104 (32%)
Ig strand A 27..31 CDD:409353 1/3 (33%)
Ig strand A' 34..39 CDD:409353 1/4 (25%)
Ig strand B 45..53 CDD:409353 3/11 (27%)
Ig strand C 58..64 CDD:409353 3/5 (60%)
Ig strand C' 66..69 CDD:409353 1/2 (50%)
NrgNP_001245581.1 Ig 55..128 CDD:299845 28/74 (38%)
IG_like 57..127 CDD:214653 27/71 (38%)
Ig 135..214 CDD:299845 19/85 (22%)
IG_like 141..216 CDD:214653 18/81 (22%)
ig 251..332 CDD:278476 19/82 (23%)
I-set 339..427 CDD:254352 25/94 (27%)
Ig 354..427 CDD:299845 22/73 (30%)
I-set 432..517 CDD:254352 34/87 (39%)
Ig 446..517 CDD:299845 29/71 (41%)
I-set 522..611 CDD:254352 26/92 (28%)
ig 525..609 CDD:278476 24/87 (28%)
FN3 613..707 CDD:238020 35/101 (35%)
FN3 716..807 CDD:238020 24/97 (25%)
fn3 817..905 CDD:278470 23/87 (26%)
FN3 917..1004 CDD:238020 22/89 (25%)
FN3 1041..1111 CDD:238020
Bravo_FIGEY 1155..>1221 CDD:290593
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3513
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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