DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sgsh and CG7402

DIOPT Version :9

Sequence 1:NP_061292.2 Gene:Sgsh / 27029 MGIID:1350341 Length:502 Species:Mus musculus
Sequence 2:NP_649023.1 Gene:CG7402 / 39994 FlyBaseID:FBgn0036768 Length:579 Species:Drosophila melanogaster


Alignment Length:576 Identity:123/576 - (21%)
Similarity:206/576 - (35%) Gaps:184/576 - (31%)


- Green bases have known domain annotations that are detailed below.


Mouse    24 NVLLIVADDGGF-ESGVYNNTAIATPHLDALSRHSLIFRNAFTSVSSCSPSRASLLTGLPQHQNG 87
            |:::|:.||.|. :...:.:..|.||::|||:.:.::....:.. :.|:||||:|||       |
  Fly    29 NIVIILIDDMGMNDVSFHGSNQILTPNIDALAYNGILLNKHYVP-NLCTPSRATLLT-------G 85

Mouse    88 MYGLHQDVHHFNSF--------DKVQSLPLLLNQAGVRTGIIGKKHVG------PETVYPFDFAF 138
            .|.:|..:.||...        .:.:.:|.:...||..|.::||.|:|      ..|:..||..|
  Fly    86 KYPIHTGMQHFVIITDEPWGLPQRERLMPEIFRDAGYSTHLVGKWHLGFWRKDLTPTMRGFDHHF 150

Mouse   139 TEENS-------SVMQVGRN--------------------------ITRIKQLVQKFLQTQDDRP 170
            ...|.       .|..:.||                          .:..|::::   |....:|
  Fly   151 GYYNGYIDYYDHQVRMLDRNYSAGLDFRRDLEPCPEANGTYATEAFTSEAKRIIE---QHDKSKP 212

Mouse   171 FFLYVAFHDPHRCGHSQPQYGTFCEKFGNGESGMGYIPDWT----PQIYDPQDVMVPYFVPDTPA 231
            .|:.::    |...|:           ||.:|.| ..|:..    |.|.||:             
  Fly   213 LFMVLS----HLAVHT-----------GNEDSPM-QAPEEEVAKFPHIRDPK------------- 248

Mouse   232 ARADLAAQYTTIGRMDQGVGLVLQELRGAGVLNDTLIIFTSDNGIP-----------FP-SGRTN 284
             |...|..   |..:|:.|...:..|:..|:||:::|:..||||.|           :| .|:..
  Fly   249 -RRTYAGM---ISSLDKSVAQTIGALKDNGMLNNSIILLYSDNGAPTIGIHSNAGSNYPYRGQKE 309

Mouse   285 LYWPGTA-------EPLLVSSPEHPQRWGQVSDAYVSLLDLTPTILDWFSIPYPSYAIFGSKTIQ 342
            ..|.|..       .|||       :..|.||:..:..:|..||:.....:..|       :.:.
  Fly   310 SPWEGGIRSAGALWSPLL-------KERGYVSNQAIHAVDWLPTLAGAAGVSLP-------QDLP 360

Mouse   343 LTGRSLLPALEA--EPLWAT-------VFSSQSHHEVTMSYPMRSVYHQNF-RLIHNLSFKMPFP 397
            |.|.:|.|.|..  ||...|       ||...|:...|:.|...|.:...: :.:..|......|
  Fly   361 LDGINLWPMLSGNEEPKPRTMIHVLDEVFGYSSYMRDTLKYVNGSSFKGRYDQWLGELETNEDDP 425

Mouse   398 IDQDF---YVSPTFQDLL-NR--------------TTTGRPTGWYKDLHRYYYRERWE---LYDI 441
            :.:.:   .::...|.|| ||              |.|..|......|..::..|..:   .:|:
  Fly   426 LGESYEQHVLASDVQSLLGNRGLTKDRIRQMRSEATETCPPIEGQNPLESHFKCEPLKAPCFFDL 490

Mouse   442 SRDPRETRNLAAD-----PDLAQVLEMLKAQLV-------------------KWQW 473
            ::||.|..|||..     ..||..||.::...:                   .|:|
  Fly   491 AKDPCERYNLAQMYPLQLQQLADELEQIRKTAIPSARVPHSDSRANPTFHNGNWEW 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SgshNP_061292.2 AslA 20..464 CDD:225661 121/546 (22%)
SGSH 24..472 CDD:293751 121/573 (21%)
CG7402NP_649023.1 PRK13759 25..459 CDD:237491 105/487 (22%)
4-S 28..436 CDD:293753 100/464 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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