DRSC/TRiP Functional Genomics Resources

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Protein Alignment PABPC1 and mod

DIOPT Version :10

Sequence 1:NP_002559.2 Gene:PABPC1 / 26986 HGNCID:8554 Length:636 Species:Homo sapiens
Sequence 2:NP_524614.2 Gene:mod / 43764 FlyBaseID:FBgn0002780 Length:542 Species:Drosophila melanogaster


Alignment Length:417 Identity:96/417 - (23%)
Similarity:165/417 - (39%) Gaps:75/417 - (17%)


- Green bases have known domain annotations that are detailed below.


Human    87 SQRDPSLRKSGVGNI----------FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYG 141
            |:.:..:.|..||.|          |:.||.....:|.|...|:.||.:.:.:...:.||:|.. 
  Fly   153 SEENRGIPKVKVGKIPLGTPKNQIVFVTNLPNEYLHKDLVALFAKFGRLSALQRFTNLNGNKSV- 216

Human   142 FVHFETQEAAERAIE-KMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDE 205
            .:.|:|...||..:: |...:.|.|..:.|.:.::::|....         .|.:...|.::..:
  Fly   217 LIAFDTSTGAEAVLQAKPKALTLGDNVLSVSQPRNKEENNER---------TVVVGLIGPNITKD 272

Human   206 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
            .||..|.|..|   |:.:|..|.:.....||.....:|..||: :::..||..:.|.|.|     
  Fly   273 DLKTFFEKVAP---VEAVTISSNRLMPRAFVRLASVDDIPKAL-KLHSTELFSRFITVRR----- 328

Human   271 ERQTELKRKFEQMKQDRITRYQGVNLYVKNL--DDGIDDERLRKEFSPFGTITSAKVMMEGGRSK 333
                        :.|:.|:|...:.|.|:|:  .:....:.|.|.|..||.:....|:.    ||
  Fly   329 ------------ISQESISRTSELTLVVENVGKHESYSSDALEKIFKKFGDVEEIDVVC----SK 377

Human   334 G-FGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQA----HLTNQYMQRMASVRAVP 393
            . ..||.|...:.||||:.:::|:.|......:...:|....:|    :||:...:  |.:|.|.
  Fly   378 AVLAFVTFKQSDAATKALAQLDGKTVNKFEWKLHRFERSTSGRAILVTNLTSDATE--ADLRKVF 440

Human   394 N------PVINPYQPA-----PPSGY---FMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA--QGA 442
            |      .:|...|.|     ...|:   |:|......|...:..|:.:.:.|...:..|  |..
  Fly   441 NDSGEIESIIMLGQKAVVKFKDDEGFCKSFLANESIVNNAPIFIEPNSLLKHRLLKKRLAIGQTR 505

Human   443 RPHPFQNMPGAIRPAAPRPPFSTMRPA 469
            .|..||.   ..:|...:.||: .|||
  Fly   506 APRKFQK---DTKPNFGKKPFN-KRPA 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PABPC1NP_002559.2 PABP-1234 11..615 CDD:130689 96/417 (23%)
CSDE1-binding 166..289 23/122 (19%)
(Microbial infection) Binding to HRSV M2-1 protein. /evidence=ECO:0000269|PubMed:31649314 541..636
modNP_524614.2 RRM_SF 177..244 CDD:473069 18/67 (27%)
PABP-1234 262..>470 CDD:130689 54/234 (23%)
RRM_SF 339..414 CDD:473069 20/78 (26%)
Blue background indicates that the domain is not in the aligned region.

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