DRSC/TRiP Functional Genomics Resources

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Protein Alignment PABPC1 and CG12288

DIOPT Version :10

Sequence 1:NP_002559.2 Gene:PABPC1 / 26986 HGNCID:8554 Length:636 Species:Homo sapiens
Sequence 2:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster


Alignment Length:337 Identity:83/337 - (24%)
Similarity:135/337 - (40%) Gaps:95/337 - (28%)


- Green bases have known domain annotations that are detailed below.


Human     6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG----------------Y 54
            |:...::::||:|..:.....|.:.|.|.|.:.|||:       |:.|                .
  Fly   150 PAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRL-------RTAGGKQLFKHKQRKVAGSLN 207

Human    55 AYVNFQQPADAERALDTMNFDVIKGKPVRI----------MWSQRDPSLRKSGVGNIFIKNLDKS 109
            |||..::|..|::|| .:|....|...:|:          ....:.|| .|.....||:.:|..|
  Fly   208 AYVVLEKPEIAQQAL-ALNGSEFKENHLRVTPASMAEKFGQAKDKQPS-DKDAKRTIFVGSLKYS 270

Human   110 IDNKALYDTFSAFGNILSCKVVCD-ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
            ...:.|.:.||:.|.|...:.:.| :.|.||..:|.|:..:|...|:| :|..||:||.:.|.|:
  Fly   271 ATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALE-LNQTLLDDRPINVERY 334

Human   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 238
            :.:|     |||:                   :::|     ..|.|....|....|:|.      
  Fly   335 QVKK-----LGAK-------------------QVRD-----AAAASAASKTSSKTKAKN------ 364

Human   239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
            :....|:|.:|:..||| ||       :.||....|..|:|.|         |:||.:      |
  Fly   365 QNSAGAKKRLDKKKGKE-NG-------SLKKEGAPTGQKKKSE---------YRGVKV------D 406

Human   304 GIDDERLRKEFS 315
            ||...:..|:.|
  Fly   407 GIKKAKKPKKKS 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PABPC1NP_002559.2 PABP-1234 11..615 CDD:130689 82/332 (25%)
CSDE1-binding 166..289 27/122 (22%)
(Microbial infection) Binding to HRSV M2-1 protein. /evidence=ECO:0000269|PubMed:31649314 541..636
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828 22/88 (25%)
RRM_SF 261..332 CDD:473069 23/71 (32%)
Blue background indicates that the domain is not in the aligned region.

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