DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arhgap28 and cv-c

DIOPT Version :10

Sequence 1:XP_036016523.1 Gene:Arhgap28 / 268970 MGIID:2147003 Length:756 Species:Mus musculus
Sequence 2:NP_001097786.1 Gene:cv-c / 41749 FlyBaseID:FBgn0285955 Length:2351 Species:Drosophila melanogaster


Alignment Length:604 Identity:139/604 - (23%)
Similarity:231/604 - (38%) Gaps:127/604 - (21%)


- Green bases have known domain annotations that are detailed below.


Mouse    68 LTAYHSHARSQPQGAEPRCASRASHPLS--RKSIPRCRRINRMLSNESLHPPSFSRSNSQASVDS 130
            |:..|:..::...|.:.:..|.:.:.||  |.|..|.....|.:....||  .||...||.....
  Fly  1618 LSPMHTFPKAPFFGNDLKVPSHSDNFLSPNRSSPKRTPTTPRSMRTSPLH--FFSSPMSQLKEGK 1680

Mouse   131 SASMEEFLREIESIKESSVGA--SQEQPPTAAAAAAEVKPVDEGELEAEWLQDVGLSTLISGNEE 193
            |.....:..:.:   |||.|.  |..:|..|.........||          |:|..   |.:|.
  Fly  1681 SDDSSSYYSDSQ---ESSTGGKLSLRKPSKARRFLQRTGKVD----------DIGAH---SDSEC 1729

Mouse   194 EDGKALL--STLTRTQAAAVKKRYNTYTQTLRKKNKQPVRDVRDIFGVSESPPSDSCEHATQLDG 256
            ..|:.||  ...:.|....|||.....:..|.|..|:     ||.|     ..|.....:|....
  Fly  1730 HQGRKLLIKDANSNTTEVKVKKLTRGGSLNLGKDPKK-----RDGF-----RSSSFRSRSTSRKE 1784

Mouse   257 TKEEKDLPGVTKTSRPLSILEAIPDIAVHTNGSADAEQSVQSTLSDDDYHGKNVPAEAEELSFEV 321
            .|.::|..|.|                  |||.:..:..|:       :|...: .|...:.|..
  Fly  1785 AKNDEDTAGAT------------------TNGGSKRQPVVR-------WHSFQM-EERPNMIFRK 1823

Mouse   322 SYSEMVTEMPDRNKWKKSDIKKEDYVLTKFIIQKTRFGLTETGDLSVEDMKKIRHLSLIELTAFF 386
            .:|            ||.:..:||       .....|.....|.|.:     ||.|:|:.||...
  Fly  1824 CFS------------KKIEPLQED-------AGGMPFAAMSAGQLQI-----IRKLALVTLTGHM 1864

Mouse   387 DAF--------GIQLKR--NKTERVRGRDNGIFGVPLTVLLDNDRKKDPAVKVPLVLQKFFQKVE 441
            :.:        ..:|.:  .|.:....:|..:|||||.::|....:     .:||.::..|:.::
  Fly  1865 ERYCPSHRSGWNWELPKFIKKIKMPDYKDKKVFGVPLLMILQRSGQ-----TLPLAVRAAFRWLQ 1924

Mouse   442 ESGLESEGIFRLSGCTAKVKQYREELDARFNA----DKFKWDKMCHREAAVMLKAFFRELPTSLF 502
            .:.|:..||||.||..:::.:.||:::...:.    |.|  |.....:.|.|||.:|||||.||.
  Fly  1925 LNALDQVGIFRKSGGKSRIMKLREQIEVTDSTAECMDVF--DLQQAYDVADMLKQYFRELPESLL 1987

Mouse   503 PVEYIPAFISLMERGPDIKVQFQALHLMVMALPDANRDTAQALMAFFNKVIANESKNRMNLWNIS 567
            ..:....|:::.:..| .:|:..|:...|:.|||.||:....|:.|...|.||..:|:|...|:.
  Fly  1988 TTKMSETFVAIFQHLP-AEVRLDAVQCAVLLLPDENREILYVLLEFLTIVAANSQQNQMTSNNLG 2051

Mouse   568 TVMAPNLFFS---------------RSKHS---DCEELLLANTATHIIRLMLKYQKILWKVPSFL 614
            ..:|.::|.|               :.|.|   |.:||..|..:...:..|:::.|.::....  
  Fly  2052 VCLAQSIFHSSISTGSASVSASPRRKGKGSGMPDMKELAEAKASHECLSFMIEHYKQIYTAAK-- 2114

Mouse   615 ITQVRRMNEATMLLKKQLP 633
             .::.:.|.:.|...|.||
  Fly  2115 -EKLSKCNFSYMEESKPLP 2132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arhgap28XP_036016523.1 RhoGAP_ARHGAP18 408..619 CDD:239856 61/232 (26%)
cv-cNP_001097786.1 SAM_DLC1,2-like 1382..1441 CDD:188937
RhoGAP_DLC1 1893..2116 CDD:239840 62/233 (27%)
SRPBCC 2148..2343 CDD:472699
Blue background indicates that the domain is not in the aligned region.

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