DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Egflam and trol

DIOPT Version :9

Sequence 1:NP_001276425.1 Gene:Egflam / 268780 MGIID:2146149 Length:1017 Species:Mus musculus
Sequence 2:NP_001027038.3 Gene:trol / 45320 FlyBaseID:FBgn0284408 Length:4479 Species:Drosophila melanogaster


Alignment Length:1175 Identity:280/1175 - (23%)
Similarity:437/1175 - (37%) Gaps:275/1175 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse    34 KVGPPLDIKLGALNCTAFSIQWKT----PKRSGSSIIGYTV-FYSEVGSDKSLRERSHNVPVGQD 93
            :.|..||:.....|.....:.|.|    |..|...|:|..: |.|                    
  Fly  3375 EAGQNLDVHCQVENVRPEDVHWSTDNNRPLPSSVRIVGSVLRFVS-------------------- 3419

Mouse    94 TLITEEVIGDLKPGTEYQVSVAAYSQTGKGRLSFPRHVTTLSQDSCLPPAAPQQPH--------V 150
              ||:...|      ||:.|  |::|.| .|....|.......|....|.:..|.|        .
  Fly  3420 --ITQAAAG------EYRCS--AFNQYG-NRSQIARVAVKKPADFHQVPQSQLQRHREGENIQLQ 3473

Mouse   151 LVVSD-------SEVALSW-----RPGENEGSAPIQSYSVEFIRP-----------DFDKSWTII 192
            ..|:|       ..|..:|     ||..|......|...:..:||           |.|:...: 
  Fly  3474 CTVTDQYGVRAQDNVEFNWFRDDRRPLPNNARTDSQILVLTNLRPEDAGRYICNSYDVDRGQQL- 3537

Mouse   193 QERLQMDSMVIKGLD-PDTNYQFAVK-----AMNAHGFSPRSWPSNTVRTLGPG-EAGSGHYG-- 248
             ..:.:|..|::... |...::..|.     .|..:..:..:.|.|:...|.|. .|.|..|.  
  Fly  3538 -PEVSIDLQVLRAPQYPYNRFKGGVSLKDTPCMVLYICAAATPPPNSPIYLPPQLPAKSRDYSLK 3601

Mouse   249 -PGYITNPGVSEDDD---GSEDELDLDVSFEEVKPLPAT----KVGNKKFSVESKKTSVSNSVMG 305
             ....:|....|..|   .|.|:...||.:|.....|.:    :|||:...     ::||.|..|
  Fly  3602 LDDQSSNLRAGESTDVECYSSDDTYTDVVWERSDGAPLSNNVRQVGNRLVI-----SNVSPSDAG 3661

Mouse   306 SRL--AQPTSASLHETT--VAIPPTPAQRKGKNSV-AMMSRLFDMSC--DET------------- 350
            :.:  .:.....|:.|:  :.:...|.:.|....| |.:....|:.|  ||:             
  Fly  3662 NYVCKCKTDEGDLYTTSYKLEVEDQPHELKSSKIVYAKVGANADLQCGADESRQPTYRWSRQYGQ 3726

Mouse   351 ----------LCSADSFCVNDYAWGGSRCHCNLGKGGEACSEDIFI---QYPQF--FGHSYVTFE 400
                      ..|.||...||.  |...|......|..|...:|.:   ..|||  ...||::|.
  Fly  3727 LQAGRSLMNEKLSLDSVQANDA--GTYICTAQYADGETADFPNILVVTGAIPQFRQEPRSYMSFP 3789

Mouse   401 PLKNSYQAFQVTLEFRAEAEDGLLLYCGESEHGRGDFMSLALIRRSLHFRFNCGTGIAIIISETK 465
            .|.||...|...|.||.|..|||||:.|:: .|.||:::|:|..|...|||:.|....::.:|..
  Fly  3790 TLPNSSFKFNFELTFRPENGDGLLLFNGQT-RGSGDYIALSLKDRYAEFRFDFGGKPMLVRAEEP 3853

Mouse   466 IKLGAWHTVTLYRDGLNGMLQLNNGTPVTGQSQGQYSKITFRTPLYLGGAPSAYW-LVRATGTNR 529
            :.|..||||.:.|...:|.:|::...||...:..|..::.....||:||.|:  | |:.|...::
  Fly  3854 LALNEWHTVRVSRFKRDGYIQVDEQHPVAFPTLQQIPQLDLIEDLYIGGVPN--WELLPADAVSQ 3916

Mouse   530 --GFQGCVQSLSVNGKKI-------------DMRPWPLGKALN---------------------- 557
              ||.||:..|::.|:.:             |.||...|...|                      
  Fly  3917 QVGFVGCISRLTLQGRTVELIREAKYKEGITDCRPCAQGPCQNKGVCLESQTEQAYTCICQPGWT 3981

Mouse   558 GADVG----ECSSGICDEASCIHGGTCAAIKADSYICLCPLGFRGRHCEDAFALTIPQFRESL-- 616
            |.|..    :|:.|:|.      .|.|...:.|.. |||||...|..|         |:.|.|  
  Fly  3982 GRDCAIEGTQCTPGVCG------AGRCENTENDME-CLCPLNRSGDRC---------QYNEILNE 4030

Mouse   617 -------RSYAATPWPLEPQHYLSFTEFEITF--RPDS-GDGVLLYSYDT--GSKDFLSINMAAG 669
                   .|:||...|       ..|:..||.  ||.| .|.|:||:.::  .|.|:|::.:..|
  Fly  4031 HSLNFKGNSFAAYGTP-------KVTKVNITLSVRPASLEDSVILYTAESTLPSGDYLALVLRGG 4088

Mouse   670 HVEFRFDCGSGTG--VLRSEAPLTLGQWHDLRVSRTAKNGILQVDKQKVVEGMAEGGFTQIKCNT 732
            |.|...:..:...  |:||..||.|.:|..:.:.|....|||:|......:..|.|....:...|
  Fly  4089 HAELLINTAARLDPVVVRSAEPLPLNRWTRIEIRRRLGEGILRVGDGPERKAKAPGSDRILSLKT 4153

Mouse   733 DIFIGGVPNYD----DVKKNSGILHPFSGSIQKIILNDRTIHVKHDFTSGVNVEN---------- 783
            .:::||   ||    .|.::..|...|.|.|.::....:.:::..|.....|:::          
  Fly  4154 HLYVGG---YDRSTVKVNRDVNITKGFDGCISRLYNFQKPVNLLADIKDAANIQSCGETNMIGGD 4215

Mouse   784 ------------------------AAHPCVGAPCAHGGSCRPRKEGYECDCPLGFEGLNCQKECG 824
                                    |..||...||.:||||..:::...|.||.||.|.:||    
  Fly  4216 EDSDNEPPVPPPTPDVHENELQPYAMAPCASDPCENGGSCSEQEDVAVCSCPFGFSGKHCQ---- 4276

Mouse   825 NHCLNTIIEAIEI---PQFIGRSYLTYDNPNILKRVSGSRSNAFMRFKTTAKDGLLLWRGDSPMR 886
                    |.:::   ..|.|..|:..:..:....:..|.::..:.|.|...:|||.|.|.....
  Fly  4277 --------EHLQLGFNASFRGDGYVELNRSHFQPALEQSYTSMGIVFTTNKPNGLLFWWGQEAGE 4333

Mouse   887 --PNSDFISLGLRDGALIFSYNLGSGVASIMVNGSF--SDGRWHRVKAVRDGQSGKITVDDYGAR 947
              ...|||:..:.||.:.:|..| .|..:::.|...  .:|..|.|.|.||..:..:.||.. ..
  Fly  4334 EYTGQDFIAAAVVDGYVEYSMRL-DGEEAVIRNSDIRVDNGERHIVIAKRDENTAILEVDRM-LH 4396

Mouse   948 TGKS-PGLMRQLNINGALYVGGMKEIALHTNRQYLRGLVGCISHFTLSTDYHISLVEDAVDGKNI 1011
            :|:: |...:.:.:.|.::|||..::.:.|..:|...|.|||......|...|:|...||:|.|.
  Fly  4397 SGETRPTSKKSMKLPGNVFVGGAPDLEVFTGFRYKHNLNGCIVVVEGETVGQINLSSAAVNGVNA 4461

Mouse  1012 NTCGA 1016
            |.|.|
  Fly  4462 NVCPA 4466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EgflamNP_001276425.1 FN3 36..133 CDD:238020 23/101 (23%)
FN3 142..236 CDD:238020 22/130 (17%)
LamG 391..541 CDD:238058 53/154 (34%)
EGF_CA 560..602 CDD:238011 13/45 (29%)
LamG 618..765 CDD:238058 44/157 (28%)
EGF_CA 790..820 CDD:238011 12/29 (41%)
Laminin_G_2 868..993 CDD:280389 36/129 (28%)
trolNP_001027038.3 LDLa 447..480 CDD:238060
LDLa 532..564 CDD:238060
LDLa 571..606 CDD:238060
LDLa 616..650 CDD:238060
LDLa 704..739 CDD:238060
LDLa 813..847 CDD:238060
LDLa 852..887 CDD:238060
LDLa 902..936 CDD:238060
LDLa 956..990 CDD:238060
LDLa 997..1030 CDD:238060
LDLa 1033..1067 CDD:238060
LDLa 1072..1105 CDD:238060
LDLa 1133..1165 CDD:238060
LDLa 1182..1215 CDD:238060
LDLa 1221..1251 CDD:238060
LDLa 1252..1286 CDD:238060
LDLa 1292..1326 CDD:238060
IG 1344..1421 CDD:214652
Ig 1344..1405 CDD:299845
LDLa 1439..1473 CDD:238060
LDLa 1479..1513 CDD:238060
LDLa 1522..1556 CDD:238060
IG_like 1566..1649 CDD:214653
Ig_Perlecan_D2_like 1574..1649 CDD:143220
Laminin_B 1748..1864 CDD:278481
EGF_Lam 1935..1989 CDD:238012
Laminin_B 2113..2238 CDD:278481
EGF_Lam <2250..2276 CDD:238012
EGF_Lam 2284..2333 CDD:238012
Laminin_EGF <2369..2399 CDD:278482
Laminin_B 2465..2587 CDD:278481
I-set 2686..2772 CDD:254352
Ig_2 2689..2771 CDD:290606
Ig 2779..2865 CDD:299845
IG_like 2798..2864 CDD:214653
Ig 2882..2965 CDD:299845
IG_like 2882..2950 CDD:214653
Ig 2977..3061 CDD:299845
IG_like 2984..3058 CDD:214653
IG_like 3074..3152 CDD:214653
Ig 3086..3153 CDD:299845
I-set 3155..3243 CDD:254352
IGc2 3171..3233 CDD:197706
IG 3371..3447 CDD:214652 23/102 (23%)
IGc2 3377..3437 CDD:197706 20/89 (22%)
Ig 3456..3534 CDD:299845 15/77 (19%)
IG 3465..>3526 CDD:214652 10/60 (17%)
Ig 3603..3665 CDD:299845 16/66 (24%)
IG 3610..3683 CDD:214652 17/77 (22%)
IG 3696..3762 CDD:214652 14/67 (21%)
Ig 3704..3771 CDD:299845 14/68 (21%)
LamG 3784..3929 CDD:238058 52/147 (35%)
EGF 3952..3984 CDD:278437 3/31 (10%)
LamG 4032..4185 CDD:238058 44/162 (27%)
Laminin_G_2 4315..4444 CDD:280389 36/130 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D17288at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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