DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GFI1 and sens-2

DIOPT Version :10

Sequence 1:NP_005254.2 Gene:GFI1 / 2672 HGNCID:4237 Length:422 Species:Homo sapiens
Sequence 2:NP_723223.1 Gene:sens-2 / 33957 FlyBaseID:FBgn0051632 Length:746 Species:Drosophila melanogaster


Alignment Length:516 Identity:204/516 - (39%)
Similarity:249/516 - (48%) Gaps:137/516 - (26%)


- Green bases have known domain annotations that are detailed below.


Human     4 SFLVKSKKAHSYHQPRS-----PGPDYSLRLENVPAPSRA-----------------DSTSNAGG 46
            |.|.|:::.|..|..:|     |.|.:....|.:...||:                 |:.||...
  Fly   193 SMLSKNQQMHQQHHQQSHLAQRPKPAFISASEKLRRQSRSRSRSRSRSPCSSQIDMEDADSNHSH 257

Human    47 AKAEPRDRLSPESQLTEAPDRASASPDSCEGSVCERSSEFEDFWRPP------SPSASPASEK-- 103
            .....|.|....|: :.:..|:.:|..|.|..|..          ||      |||.:.||..  
  Fly   258 RSLHSRSRSRSRSR-SHSRSRSHSSSSSVELEVDS----------PPGSPRISSPSGASASASEL 311

Human   104 -------------------SMCPSLDEAQPFPLPFKPYSWSGLAGSDLRHLVQS-----YRPCGA 144
                               |:...|...:|.|....|.|      ..|.||..|     :.|..|
  Fly   312 LITANGGGRSIGSKKSDLFSVSALLRRDEPPPQRRTPRS------PPLGHLTSSGLAMPFNPLEA 370

Human   145 LERG----AGLGLFCEPAPEPG------------------------------HP---------AA 166
            :.:|    ....:|..|...|.                              ||         .:
  Fly   371 MRQGYPPNYDAAMFQRPLFSPALPFFAAVAFHQGQQQQQQQQQQQSGLAAGYHPDSQENLFRLRS 435

Human   167 LYGPKRAAGGAGAGAPGSCSAGAGATAGPGLGLYGDFGSAAAGLYERPTAA-AGLLYPERGHGLH 230
            |..|.::||...:.|..:.:|.|.|..|.|:|:         |:...|... .||.:....|..|
  Fly   436 LMVPLQSAGQNNSSAAAAAAAAAAAAVGVGVGV---------GVGVPPNGGHLGLPHSPHLHHFH 491

Human   231 --ADKGAGVKVESELLCTRLLLGGGSYKCIKCSKVFSTPHGLEVHVRRSHSGTRPFACEMCGKTF 293
              |.|..|:...|:|           |.|:||.|:||||||||||.||:|.|.:|:|||:|.|||
  Fly   492 HMAAKWPGLHQFSDL-----------YSCMKCEKMFSTPHGLEVHSRRTHHGKKPYACELCNKTF 545

Human   294 GHAVSLEQHKAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 358
            ||.|||.||:|||:.|:.|:||.|||.||||||||||||||||||||||.|||||||||||||||
  Fly   546 GHEVSLSQHRAVHNVEKVFECKQCGKRFKRSSTLSTHLLIHSDTRPYPCNYCGKRFHQKSDMKKH 610

Human   359 TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQH 419
            |:||||||||||||||||||||||||||||||||:|||.|.||.|.||||||||||:||||
  Fly   611 TYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGYKPFSCKLCHKAFQRKVDLRRHKETQH 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GFI1NP_005254.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..109 30/153 (20%)
SNAG domain. /evidence=ECO:0000250 1..20 5/15 (33%)
Required for interaction with RELA. /evidence=ECO:0000269|PubMed:20547752 140..257 31/162 (19%)
COG5048 <254..416 CDD:227381 131/161 (81%)
C2H2 Zn finger 257..278 CDD:275368 16/20 (80%)
C2H2 Zn finger 286..306 CDD:275368 14/19 (74%)
C2H2 Zn finger 314..334 CDD:275368 17/19 (89%)
C2H2 Zn finger 342..362 CDD:275368 17/19 (89%)
C2H2 Zn finger 370..390 CDD:275368 19/19 (100%)
C2H2 Zn finger 398..417 CDD:275368 14/18 (78%)
sens-2NP_723223.1 COG5048 <504..672 CDD:227381 137/179 (77%)
C2H2 Zn finger 509..530 CDD:275368 16/20 (80%)
SUF4-like 534..>589 CDD:411020 40/54 (74%)
C2H2 Zn finger 538..558 CDD:411020 14/19 (74%)
C2H2 Zn finger 538..558 CDD:275368 14/19 (74%)
C2H2 Zn finger 566..586 CDD:411020 17/19 (89%)
C2H2 Zn finger 566..586 CDD:275368 17/19 (89%)
C2H2 Zn finger 594..614 CDD:275368 17/19 (89%)
zf-H2C2_2 606..631 CDD:463886 23/24 (96%)
C2H2 Zn finger 622..642 CDD:275368 19/19 (100%)
C2H2 Zn finger 650..677 CDD:275368 18/22 (82%)

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