DRSC/TRiP Functional Genomics Resources

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Protein Alignment GFAP and mua-6

DIOPT Version :10

Sequence 1:NP_001350775.1 Gene:GFAP / 2670 HGNCID:4235 Length:472 Species:Homo sapiens
Sequence 2:NP_510648.1 Gene:mua-6 / 181698 WormBaseID:WBGene00003485 Length:581 Species:Caenorhabditis elegans


Alignment Length:462 Identity:135/462 - (29%)
Similarity:211/462 - (45%) Gaps:96/462 - (20%)


- Green bases have known domain annotations that are detailed below.


Human    63 KETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRA--------------------- 106
            ::.|..|:.|:||||||.||||||||||:.||:.|.|:|..|:.                     
 Worm    65 RDNREREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQGRFGKSTGSVKVMYEMEITTAT 129

Human   107 --------------KEPTKLADVYQAELR-----------ELRLRLDQLTANSARLEVERDNLAQ 146
                          ||..||.|... |||           |.||::|.|....:.||.|.:.|.:
 Worm   130 NVVKQTGKDHGETEKEIRKLQDQLD-ELRKKFEEAQRGRAEDRLKIDDLLVTLSNLEAEINLLKR 193

Human   147 DLATVRQ---KLQDETNLRLEAENNLAAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEV 208
            .:|.:.:   :|:.| |.||.:|  |...|.|.|:.||.|:|.:.|::::.|||.|:::..|.|:
 Worm   194 RIALLEEEVARLKKE-NFRLTSE--LQRVRIELDQETLLRIDNQNKVKTILEEIDFMKRGFETEL 255

Human   209 RELQEQLARQQVHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADL-TDAAARNA 272
            :|||.|.||.......:..|.:|..|:::||.:|:.:.:.|.::.|.||:.:..:: |.:..:||
 Worm   256 KELQAQAARDTTSENREYFKNELANAMRDIRAEYDQIMNGNRNDMESWYQLRVQEINTQSNRQNA 320

Human   273 ELLRQAKHEANDYRRQLQSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEEEGQS 337
            |...| |.|....|.|...|...|..|...|..||:|:.:...:...:..||:.||...:.:.:.
 Worm   321 ENNYQ-KEEVKRLRNQTSELRQKLSDLESRNLLLEKQIEDLNYQLEDDQRSYEAALNDKDAQIRK 384

Human   338 LKDEMARHLQEYQDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRGGKSTKDGENHK 402
            |::|....:.|.|.||:.|..||.|:..||::|||                      ..:|..  
 Worm   385 LREECQALMVELQMLLDTKQTLDGELKVYRQMLEG----------------------NSEGNG-- 425

Human   403 VTRYLKSLTIRVIPIQAHQIVNGTPPARETSLDTKSVSEG-HLKRNIVVKTVEMRDGEV-IKESK 465
                |:.|..:|:...|   :|     .|...:|..|.:| |..|....::.:   |.| |||:.
 Worm   426 ----LRQLVEKVVRTSA---IN-----EEADTETMRVVKGEHSSRTSYQRSAK---GNVAIKETS 475

Human   466 QEHKDVM 472
            .|.|.|:
 Worm   476 PEGKFVI 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GFAPNP_001350775.1 Filament_head 4..66 CDD:461414 0/2 (0%)
Filament 68..376 CDD:459643 114/357 (32%)
mua-6NP_510648.1 Filament 71..419 CDD:459643 112/352 (32%)
LTD 464..570 CDD:460003 8/22 (36%)

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