DRSC/TRiP Functional Genomics Resources

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Protein Alignment GFAP and arrdc1

DIOPT Version :10

Sequence 1:NP_001350775.1 Gene:GFAP / 2670 HGNCID:4235 Length:472 Species:Homo sapiens
Sequence 2:XP_031746886.1 Gene:arrdc1 / 100485555 XenbaseID:XB-GENE-486342 Length:452 Species:Xenopus tropicalis


Alignment Length:195 Identity:37/195 - (18%)
Similarity:66/195 - (33%) Gaps:65/195 - (33%)


- Green bases have known domain annotations that are detailed below.


Human   101 LNQLRAKEPT--------KLADVYQAELRELRLRLDQLTANSARL-------------EVERDNL 144
            |.:||.|...        |:....:|.:...||..|.   .||:|             |:|:.|.
 Frog   116 LEKLRPKRAATSFEGPFGKVTHQVRAAIETKRLSKDY---KSAKLFYILRPLDLNEIPEIEQRNC 177

Human   145 AQDLATVRQKLQDETNLRLEAENNLAAYRQEADEATLARLDLERK--------IESLEEEIRF-- 199
            |.........|.....:.|.|.::|..|  ...:|.....:||.|        :.:|.::|.:  
 Frog   178 ASATKKFNYLLVKSGQVLLAASSDLRGY--VVGQAIQIHTELENKSGRDTGSIVAALVQKIAYKS 240

Human   200 ------LRKIHEEE---VRELQEQLARQQV--------------------HVELDVAKPDLTAAL 235
                  ||.|.|.|   |:..:..:..:|:                    ::::.|..|:::..|
 Frog   241 KRVVYDLRTIAEVEGAPVKAWKRAVWDEQILVPALPQSILQGCNLIHIDYYIQVTVKNPEVSVTL 305

Human   236  235
             Frog   306  305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GFAPNP_001350775.1 Filament_head 4..66 CDD:461414
Filament 68..376 CDD:459643 37/195 (19%)
arrdc1XP_031746886.1 Arrestin_N 7..167 CDD:451447 12/53 (23%)
Arrestin_C 190..313 CDD:214976 20/118 (17%)
Blue background indicates that the domain is not in the aligned region.

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