DRSC/TRiP Functional Genomics Resources

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Protein Alignment AMFR and hrdl-1

DIOPT Version :9

Sequence 1:NP_001310441.1 Gene:AMFR / 267 HGNCID:463 Length:675 Species:Homo sapiens
Sequence 2:NP_492602.2 Gene:hrdl-1 / 172833 WormBaseID:WBGene00009164 Length:579 Species:Caenorhabditis elegans


Alignment Length:673 Identity:152/673 - (22%)
Similarity:271/673 - (40%) Gaps:160/673 - (23%)


- Green bases have known domain annotations that are detailed below.


Human     6 LERFPWPSLRTYTGLSGLALL---GTIISAYRALSQPEAGPGEPDQLTASLQPEPPAPARPSA-- 65
            |.|..:||:.:|..||.|..:   .|:.:.:|  ||||        |...::.|.....|.|:  
 Worm    22 LSRSSFPSVDSYLALSVLVAIVASVTVFTTFR--SQPE--------LQKLIEEELRNNTRLSSAY 76

Human    66 -------GGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKDKFW 123
                   .|.....:|.|:|||:..:||.:|:...:|.:..:||..:.|..|...|....:..|:
 Worm    77 GLNIEALSGHTFFQIAHYILSDTTLIWVAINSYFAILAVCTRLIIKLTFKELARQEENVARQAFF 141

Human   124 NFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFL-HLMVQLCKDRFEYLSFSPTTPMSSHGRVL 187
            .::....:::..|:..|....|:.|.:|.....|| ||....|: |.:::|     |....|...
 Worm   142 CYVLLTIVYLSVVIGPQKGHRVMPWMIWGGICAFLSHLQFITCQ-RLKHIS-----PSCDRGSQK 200

Human   188 SLLVAMLLSCCGLAAVCSITGYTHGM--HTLAFMAAESLLVTVRTAHVILRYV--IHLWDLN--- 245
            ...:::.|....:|....|:.:.|.:  .....:..:.||...|:.:::.|.:  ..::..|   
 Worm   201 ISFLSLFLFFVSIAMTFLISRFQHHLTWQPAVLLYFDCLLAVFRSTYILFRCISSSRVFSFNPDS 265

Human   246 --HEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNI-----WLSMASLVIFMQLRYLFH 303
              |...|     ....|:||.||          |.||.|..:     .|::.|:.....::..::
 Worm   266 VRHFNYW-----LELITNFVCEL----------IQMLSFAQLLAFSPGLNLTSIFFLYHMKLTYN 315

Human   304 EVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDD-CAICWDSMQAARKLPCGHLFHNSCLRS 367
            .:..::.||:|:.::..::|..:    |.....|.|| |.:||:.:..:|:|||.|.||:.||..
 Worm   316 CMTEQLSRHRNHKKIFEHIERSY----PSVKCANGDDRCVVCWELLGTSRRLPCSHQFHDWCLMW 376

Human   368 WLEQDTSCPTCRMSLNIADNNRVREEHQGENLDENLVPVAAAEGRPRLNQHNH-FFHFDGDDSSM 431
            ||.||:||||||.::. :..:::|:.           |......|.|.|..:. |.||       
 Worm   377 WLAQDSSCPTCRCTIP-SPQDQIRQP-----------PEVGNSTRLRFNGGSFGFVHF------- 422

Human   432 RVTAPEDVPVGQEVEVVDSDTDAPDLWSRIASWLPSFSVEVMHTTN-ILG-ITQASNSQLNAMAH 494
                                              |:|::||..... ..| ..:.:..||..|..
 Worm   423 ----------------------------------PAFTLEVAANFGPFFGRAAEPTEEQLQTMLE 453

Human   495 QIQEMFPQVPYHLVLQDLQLTRSVEITTDNILEGRIQVPFPTQRSDSIRPALNSPVERPSSDQEE 559
            |::|||||:...:::.||:.:.|.:.|.:|||||||.:      :.|..|  ...::...||:.|
 Worm   454 QVREMFPQMSVDIIMTDLRQSGSAQSTIENILEGRIGM------NASFMP--GGVLDDELSDESE 510

Human   560 GETSAQTERVPLDLSPRLEETLDFGEVEVEPSEVEDFEARGSR------FSKSADERQRMLVQRK 618
            .|...:                       ||:|:......|.:      .|.|.||.......::
 Worm   511 NEIEYE-----------------------EPAEIVQEPDNGRQRTWTKLSSSSGDEDLSYYEIQR 552

Human   619 DELLQQARKRFLNKSSEDDAASE 641
            .::::..|:::|    |.|.|::
 Worm   553 AKMIETYRRKYL----ESDKAAD 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AMFRNP_001310441.1 None
hrdl-1NP_492602.2 HRD1 <200..>407 CDD:227568 54/237 (23%)
zf-RING_2 348..388 CDD:290367 21/39 (54%)
CUE_AMFR 449..489 CDD:270604 16/39 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C161472038
Domainoid 1 1.000 63 1.000 Domainoid score I7431
eggNOG 1 0.900 - - E1_COG5243
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H888
Inparanoid 1 1.050 163 1.000 Inparanoid score I3239
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55068
OrthoDB 1 1.010 - - D271732at33208
OrthoFinder 1 1.000 - - FOG0006872
OrthoInspector 1 1.000 - - oto22436
orthoMCL 1 0.900 - - OOG6_105132
Panther 1 1.100 - - LDO PTHR15067
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3836
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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