DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psg19 and nrm

DIOPT Version :9

Sequence 1:NP_036094.2 Gene:Psg19 / 26439 MGIID:1347252 Length:475 Species:Mus musculus
Sequence 2:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster


Alignment Length:553 Identity:109/553 - (19%)
Similarity:192/553 - (34%) Gaps:162/553 - (29%)


- Green bases have known domain annotations that are detailed below.


Mouse    31 PITARVTIESVPPKLVE----------GENVLLRVDNL--PENLRVFAWYRGVIKFKLGIALYSL 83
            ||::.:|:|.:.|.:|:          .|.|||..:..  |.:|....|||..|       |.::
  Fly   364 PISSALTLEVLYPPVVKVSPSAITANTSEIVLLNCEYFANPASLTQVEWYRNDI-------LVNV 421

Mouse    84 DYNTSVTGPEHSGRETLHSNGSLWIQSATREDTGYYTFQTISKNGKVVSNTSMFLQVYSSLFICG 148
            :..|...|..       ..|.:|.|:|..:||.|.|:.|..:..||..|:..:.|.|..:..:  
  Fly   422 NDTTHYKGGN-------SENVALVIKSTEKEDIGNYSCQLSNNIGKGTSDQKINLDVQYAPTV-- 477

Mouse   149 RPSPPALLTIESVPASVAEGGSVLLRVHNL---PEHLQSLFWYKGLTMFNKV--------EIARH 202
                 .:|.|...|...::..:|.|..:.|   |..|..:.||...|:..::        ::...
  Fly   478 -----EILMIPEGPVKESDESNVTLFCNVLDANPSVLTKVRWYANSTLLKELPDCEETREDLCHI 537

Mouse   203 RTAK-------------------NSIEMGPAHSGREIV--YSNGSLLL----------QNVTWK- 235
            ..:|                   |:...||....:|::  |..|...|          ::||:. 
  Fly   538 DPSKLLLESIGRGFFYNYSCEGFNAAGWGPRSEDKELLVHYEPGPAALSHFPLVAVKKKSVTFSC 602

Mouse   236 ---DIGFYTLRTLNRYSRIELAHIYLQ-------------VDTSLSSCCDAFNSVQLRIDPVPPH 284
               |.||   ...||:..:......||             :|:..:..|.|:|            
  Fly   603 SVDDPGF---PESNRFRWLRGGRGPLQDIVTKDWTVEPVGLDSRTNYSCYAYN------------ 652

Mouse   285 AVEG-----ESVLLQVHNLPEDVQTFLWYKGV-YSTQDFKI-AEYSIVTESIISGRAHSGREIGY 342
              ||     .:|.|:||..|..::....|.|: :|:.:..: .....|....||.: ..|..|..
  Fly   653 --EGGKGVMATVNLEVHAPPFFIKNLPPYTGILHSSPNATLTCRIECVPRCDISWQ-KDGVPIER 714

Mouse   343 TNGSLLLQ----DVTEKDSGFYTLVTI---------DSNAKVETAHVQ---VNVNKLV------- 384
            .:....::    |.:.....|.:::::         ||...:|..:..   |:...:|       
  Fly   715 NDSRYFIKEKYMDASPATGDFESMLSVLHFNMPNWPDSKFNIEADNANYSCVSTGNIVGGSIRSR 779

Mouse   385 -------TQPAMRVTDSTVRVQSSVV---FTCFS-DNTGVSIRWLFNNQRLQLTERMTLSPSKCQ 438
                   ......|:::.|.||...:   ..|.| .|...|.:|:|.|:        |::.....
  Fly   780 TYFGIEYAPENTTVSENIVYVQEDTIPGRVICKSRANPEPSYKWIFKNE--------TIANGNAL 836

Mouse   439 LRIHTVRKEDAGEYQCEAFNPVSS---KTSLPV 468
            :....:.:.|.|.|.|.|:|...|   ||.:.|
  Fly   837 IINTAMNRNDDGTYTCLAYNKHGSSIAKTVIKV 869

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Psg19NP_036094.2 Ig_CEACAM_D1 36..140 CDD:143251 30/115 (26%)
IG_like 46..134 CDD:214653 26/99 (26%)
Ig_CEACAM_D1 156..260 CDD:143251 28/162 (17%)
Ig_CEACAM_D1 276..380 CDD:143251 21/126 (17%)
IG_like 395..472 CDD:214653 21/81 (26%)
IGc2 400..461 CDD:197706 14/64 (22%)
nrmNP_001246890.1 Ig 44..152 CDD:299845
Ig 176..248 CDD:299845
Ig 277..354 CDD:299845
IG_like 383..463 CDD:214653 24/93 (26%)
Ig 394..463 CDD:143165 23/82 (28%)
Ig_3 585..652 CDD:290638 13/69 (19%)
Ig 685..>719 CDD:299845 6/34 (18%)
IG_like 788..869 CDD:214653 21/88 (24%)
Ig <811..869 CDD:299845 17/65 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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