DRSC/TRiP Functional Genomics Resources

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Protein Alignment Psg18 and nrm

DIOPT Version :9

Sequence 1:NP_036093.2 Gene:Psg18 / 26438 MGIID:1347251 Length:476 Species:Mus musculus
Sequence 2:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster


Alignment Length:464 Identity:92/464 - (19%)
Similarity:163/464 - (35%) Gaps:125/464 - (26%)


- Green bases have known domain annotations that are detailed below.


Mouse    34 ARVTIESLPPQVYEGENVLLRVDNMPENLLVFGWYRGMTNLWQAIAQHWLYYYSVMVKGLNHSGR 98
            |..|:.:..||              ||    ..|:||...|......|.|      |.||..|..
  Fly   185 ATCTVRNTRPQ--------------PE----VSWFRGTKRLTTYSPTHDL------VDGLYTSTL 225

Mouse    99 EILYINGSLWIQNVTQEDTGYYTFQTISKR--GEIVSNTSLYLHVYSSLFICVRPTTLISPTIEL 161
            |:.:        .:::||..    |.|..|  ...:.|.::   ...|:.:.||||::   .|..
  Fly   226 ELDW--------TLSREDLA----QDIECRVKSAAIQNVTV---TKFSVDLQVRPTSI---DING 272

Mouse   162 VPASVAAGGSILLL--VHNIPKYLQSLFWYK--GLIAFNKVEIARYRTAKNSGEPGPAHSGRETV 222
            |......|..::|.  :|. .:...:|.||.  .:|:..:.||...|:.......|..|:..|.:
  Fly   273 VKHHTVQGSKVVLTCDIHG-ARPAVNLTWYNTTTIISSGENEITEVRSKSLEKSDGTFHTQSELI 336

Mouse   223 YSNGSLLLQNVTWKDTGFYTLRTLTRYQ-----KMEFAHIYLQVD----TSHSLCCDTLDSAQLS 278
            ::                     .||::     :.|..:|.||::    .|.:|..:.|....:.
  Fly   337 FN---------------------ATRFENDRVFRCEAENIVLQINREKPISSALTLEVLYPPVVK 380

Mouse   279 IDPVPRHAAEGGSVLLQVHNL--PEDVQTFSWYK-----GVLSTQDFKIAEYSIATKSIIRGRAH 336
            :.|....|.....|||.....  |..:....||:     .|..|..:|            .|.:.
  Fly   381 VSPSAITANTSEIVLLNCEYFANPASLTQVEWYRNDILVNVNDTTHYK------------GGNSE 433

Mouse   337 SRREIGYTNGSLLLQDVTEKDSGLYTLITIDSNVRVVTAHVQVN--IHQLVTQPAMRVTDSTVRV 399
                    |.:|:::...::|.|.|: ..:.:|:...|:..::|  :....|...:.:.:..|:.
  Fly   434 --------NVALVIKSTEKEDIGNYS-CQLSNNIGKGTSDQKINLDVQYAPTVEILMIPEGPVKE 489

Mouse   400 --QSSVVFTC--FSDNTGV--SIRWLFNNQRLQ--------LTERMTLSPSKCQLRIHTVRKEDA 450
              :|:|...|  ...|..|  .:||..|:..|:        ..:...:.|||  |.:.::.:...
  Fly   490 SDESNVTLFCNVLDANPSVLTKVRWYANSTLLKELPDCEETREDLCHIDPSK--LLLESIGRGFF 552

Mouse   451 GEYQCEAFN 459
            ..|.||.||
  Fly   553 YNYSCEGFN 561

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Psg18NP_036093.2 Ig_CEACAM_D1 36..141 CDD:143251 22/106 (21%)
IG_like <104..138 CDD:214653 6/35 (17%)
Ig_CEACAM_D1 157..261 CDD:143251 20/112 (18%)
Ig_CEACAM_D1 277..379 CDD:143251 19/108 (18%)
IG_like 396..473 CDD:214653 19/78 (24%)
IGc2 401..462 CDD:197706 18/71 (25%)
nrmNP_001246890.1 Ig 44..152 CDD:299845
Ig 176..248 CDD:299845 22/98 (22%)
Ig 277..354 CDD:299845 16/98 (16%)
IG_like 383..463 CDD:214653 18/100 (18%)
Ig 394..463 CDD:143165 16/89 (18%)
Ig_3 585..652 CDD:290638
Ig 685..>719 CDD:299845
IG_like 788..869 CDD:214653
Ig <811..869 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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