DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GBP3 and gbp2

DIOPT Version :10

Sequence 1:NP_060754.2 Gene:GBP3 / 2635 HGNCID:4184 Length:595 Species:Homo sapiens
Sequence 2:NP_001072267.1 Gene:gbp2 / 779720 XenbaseID:XB-GENE-5828806 Length:591 Species:Xenopus tropicalis


Alignment Length:581 Identity:295/581 - (50%)
Similarity:399/581 - (68%) Gaps:3/581 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAPEIHMTGPMCLIENTN-GELVANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKNKG 64
            |:.:|||..|:|||||.| .|.|.|.||.:|||.||.|||||||||.||||||||||||||...|
 Frog     1 MSAQIHMKYPICLIENRNSNEFVINTEAEQILSQITDPVVVVAIVGKYRTGKSYLMNKLAGSKTG 65

Human    65 FSLGSTVKSHTKGIWMWCVPHPKKPEHTLVLLDTEGLGDVKKGDNQNDSWIFTLAVLLSSTLVYN 129
            |:||||::|.||||||||||||.:|.||||||||||||||:|||::||.|||:|||||||.||||
 Frog    66 FALGSTIQSKTKGIWMWCVPHPCQPSHTLVLLDTEGLGDVEKGDSKNDGWIFSLAVLLSSNLVYN 130

Human   130 SMGTINQQAMDQLYYVTELTHRIRSKSSPDENENEDSADFVSFFPDFVWTLRDFSLDLEADGQPL 194
            |||||:.|:|:||:||||||:.|:.||:|.|.::| |.:|...||.|.|.:|||||.||.||:.:
 Frog   131 SMGTIDHQSMEQLHYVTELTNLIKIKSNPKEGKDE-SGEFKRIFPSFTWCVRDFSLILELDGKKV 194

Human   195 TPDEYLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKKCFVFDLPIHRRKLAQLEKLQDEELDPE 259
            |.|:||..||:|.:||.:|.::|||||.||..:|...||||||.|...|.|.:||:||::.|:..
 Frog   195 TEDDYLMNSLRLKKGTDRKTQDFNLPRECILHYFHSHKCFVFDQPTSSRNLHRLEELQEQNLEET 259

Human   260 FVQQVADFCSYIFSNSKTKTLSGGIKVNGPRLESLVLTYINAISRGDLPCMENAVLALAQIENSA 324
            ||:|...||.||..:...|||.||:.|.|..|..|...||..|..|.:||||||:|||:.|||:.
 Frog   260 FVEQAQKFCGYIHRDGIAKTLPGGLLVTGRMLAHLTSLYIETIMSGSVPCMENAILALSVIENTG 324

Human   325 AVQKAIAHYDQQMGQKV-QLPAETLQELLDLHRVSEREATEVYMKNSFKDVDHLFQKKLAAQLDK 388
            |||.|:|.|:..|.:.: :.|.|||||.|.||:.||:||.||::|.||.|.:..|||:....||.
 Frog   325 AVQDALAKYETCMNEHLPRFPTETLQEFLHLHQGSEKEALEVFLKRSFNDENQDFQKEFKNLLDN 389

Human   389 KRDDFCKQNQEASSDRCSALLQVIFSPLEEEVKAGIYSKPGGYCLFIQKLQDLEKKYYEEPRKGI 453
            |..:|.::|:..|::||..::|.:...||:.:..|.:|||||:.||:::...:.::|...|.||:
 Frog   390 KMKEFSERNERESTERCQTIIQKLSESLEQRISQGEFSKPGGHKLFLKEKMTIMEEYNTTPHKGL 454

Human   454 QAEEILQTYLKSKESVTDAILQTDQILTEKEKEIEVECVKAESAQASAKMVEEMQIKYQQMMEEK 518
            ::.|:||.::.:|::...||||.|:.||.|||||.....:...|:...:::||.:...|:.||.:
 Frog   455 KSLEVLQEFISNKKATEAAILQADESLTAKEKEIAESQAETAEAERQRQILEEKEKYLQESMENQ 519

Human   519 EKSYQEHVKQLTEKMERERAQLLEEQEKTLTSKLQEQARVLKERCQGESTQLQNEIQKLQK 579
            :||:::|.|.|.||||.:|.:|:.|..:.:..|||||..:|....|.:...||.||..|.:
 Frog   520 KKSFEQHEKMLIEKMEADRQKLIAENGRVIAQKLQEQNAMLTAGFQSKVNDLQREIADLNR 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP3NP_060754.2 GTPase domain (Globular). /evidence=ECO:0000250|UniProtKB:P32455 1..309 185/308 (60%)
GBP 18..280 CDD:460516 163/262 (62%)
GBP_C 282..574 CDD:460721 117/292 (40%)
gbp2NP_001072267.1 GBP 20..280 CDD:460516 162/260 (62%)
GBP_C 282..579 CDD:460721 119/296 (40%)

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