DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GBP3 and Gbp3

DIOPT Version :10

Sequence 1:NP_060754.2 Gene:GBP3 / 2635 HGNCID:4184 Length:595 Species:Homo sapiens
Sequence 2:XP_063138992.1 Gene:Gbp3 / 685116 RGDID:1597766 Length:790 Species:Rattus norvegicus


Alignment Length:584 Identity:396/584 - (67%)
Similarity:479/584 - (82%) Gaps:0/584 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAPEIHMTGPMCLIENTNGELVANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKNKGF 65
            ||.|..|..|||||||..|:|.||.:||:|||||||||||:|.|||||||||||||||||:..||
  Rat     1 MALETCMPEPMCLIENVKGQLRANQKALEILSAITQPVVVIATVGLYRTGKSYLMNKLAGRKTGF 65

Human    66 SLGSTVKSHTKGIWMWCVPHPKKPEHTLVLLDTEGLGDVKKGDNQNDSWIFTLAVLLSSTLVYNS 130
            ||||||:|||.||||||||||:|.:||||||||||||||:|||||||.|||.||:|||||.||||
  Rat    66 SLGSTVQSHTTGIWMWCVPHPRKADHTLVLLDTEGLGDVEKGDNQNDCWIFALAILLSSTFVYNS 130

Human   131 MGTINQQAMDQLYYVTELTHRIRSKSSPDENENEDSADFVSFFPDFVWTLRDFSLDLEADGQPLT 195
            ||.|||||||||.||||||.|||:.|||..|..|.||:||||||||||||||.::.||.||:.||
  Rat   131 MGAINQQAMDQLQYVTELTDRIRTTSSPHSNGVEASAEFVSFFPDFVWTLRDVTVKLEKDGKMLT 195

Human   196 PDEYLEYSLKLTQGTSQKDKNFNLPRLCIRKFFPKKKCFVFDLPIHRRKLAQLEKLQDEELDPEF 260
            .||||:.|||..||||::|:|:|||||||||||||||||||..|...:||::||.|:|:|||.||
  Rat   196 ADEYLDNSLKPKQGTSEEDRNYNLPRLCIRKFFPKKKCFVFYSPTEWKKLSELESLRDDELDSEF 260

Human   261 VQQVADFCSYIFSNSKTKTLSGGIKVNGPRLESLVLTYINAISRGDLPCMENAVLALAQIENSAA 325
            :||.|:|||:|||:||.|.|.|||:|||.|||.||||||:|||.|.||||||||||||::|||||
  Rat   261 LQQAANFCSFIFSSSKAKRLPGGIQVNGARLEKLVLTYISAISSGHLPCMENAVLALAKVENSAA 325

Human   326 VQKAIAHYDQQMGQKVQLPAETLQELLDLHRVSEREATEVYMKNSFKDVDHLFQKKLAAQLDKKR 390
            :||||.||||||.||||||.:||||||||||..||||.:::::.||||.||.|:|.|.|||:||.
  Rat   326 IQKAITHYDQQMCQKVQLPTDTLQELLDLHRTCEREAKDIFLRTSFKDEDHSFKKDLLAQLEKKW 390

Human   391 DDFCKQNQEASSDRCSALLQVIFSPLEEEVKAGIYSKPGGYCLFIQKLQDLEKKYYEEPRKGIQA 455
            :....:|...||.|||.||:.||.||||.|..|.||:||||.|:::|.::|:|||.:||:|||||
  Rat   391 NGINNENMNKSSTRCSELLRDIFGPLEEAVINGAYSQPGGYLLYVEKREELKKKYLQEPKKGIQA 455

Human   456 EEILQTYLKSKESVTDAILQTDQILTEKEKEIEVECVKAESAQASAKMVEEMQIKYQQMMEEKEK 520
            |||||.||:|..:|.:|:||.||.||.|:||||||..|||||||:.:::||::.|:.|||:|||:
  Rat   456 EEILQEYLQSNAAVAEALLQRDQALTVKQKEIEVERAKAESAQATVRILEEVEKKHAQMMKEKER 520

Human   521 SYQEHVKQLTEKMERERAQLLEEQEKTLTSKLQEQARVLKERCQGESTQLQNEIQKLQKTLKKK 584
            .:||.|:||||.|||||||::||||:.|..|||||.|::||..:.||.:|:||||.:::..::|
  Rat   521 CHQERVRQLTENMERERAQVVEEQERILNLKLQEQKRLIKEGLKEESLRLKNEIQLMEQRNREK 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GBP3NP_060754.2 GTPase domain (Globular). /evidence=ECO:0000250|UniProtKB:P32455 1..309 227/307 (74%)
GBP 18..280 CDD:460516 195/261 (75%)
GBP_C 282..574 CDD:460721 185/291 (64%)
Gbp3XP_063138992.1 None

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